Experiment: sodium fluoride 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07765 and AO356_07770 overlap by 4 nucleotides AO356_07770 and AO356_07775 are separated by 67 nucleotides AO356_07775 and AO356_07780 are separated by 123 nucleotides
AO356_07765: AO356_07765 - toxin, at 1,730,676 to 1,735,163
_07765
AO356_07770: AO356_07770 - toxin, at 1,735,160 to 1,737,958
_07770
AO356_07775: AO356_07775 - glyoxalase, at 1,738,026 to 1,738,394
_07775
AO356_07780: AO356_07780 - D-aminoacylase, at 1,738,518 to 1,739,990
_07780
Position (kb)
1735
1736
1737
1738 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1734.163 kb on - strand, within AO356_07765 at 1734.163 kb on - strand, within AO356_07765 at 1734.219 kb on + strand, within AO356_07765 at 1734.219 kb on + strand, within AO356_07765 at 1734.220 kb on - strand, within AO356_07765 at 1734.225 kb on + strand, within AO356_07765 at 1734.271 kb on + strand, within AO356_07765 at 1734.272 kb on - strand, within AO356_07765 at 1734.272 kb on - strand, within AO356_07765 at 1734.305 kb on - strand, within AO356_07765 at 1734.451 kb on - strand, within AO356_07765 at 1734.451 kb on - strand, within AO356_07765 at 1734.453 kb on + strand, within AO356_07765 at 1734.453 kb on + strand, within AO356_07765 at 1734.789 kb on + strand at 1734.789 kb on + strand at 1734.789 kb on + strand at 1734.789 kb on + strand at 1734.789 kb on + strand at 1734.789 kb on + strand at 1734.790 kb on - strand at 1734.790 kb on - strand at 1734.790 kb on - strand at 1734.790 kb on - strand at 1734.885 kb on + strand at 1734.885 kb on + strand at 1734.886 kb on - strand at 1734.886 kb on - strand at 1734.911 kb on + strand at 1734.911 kb on + strand at 1734.911 kb on + strand at 1734.912 kb on - strand at 1734.915 kb on + strand at 1734.916 kb on - strand at 1734.916 kb on - strand at 1734.916 kb on - strand at 1734.916 kb on - strand at 1734.924 kb on + strand at 1734.925 kb on - strand at 1734.925 kb on - strand at 1734.925 kb on - strand at 1734.996 kb on + strand at 1734.997 kb on - strand at 1734.997 kb on - strand at 1734.997 kb on - strand at 1735.020 kb on + strand at 1735.020 kb on + strand at 1735.020 kb on + strand at 1735.020 kb on + strand at 1735.021 kb on - strand at 1735.021 kb on - strand at 1735.021 kb on - strand at 1735.021 kb on - strand at 1735.053 kb on + strand at 1735.054 kb on - strand at 1735.054 kb on - strand at 1735.067 kb on + strand at 1735.083 kb on + strand at 1735.083 kb on + strand at 1735.238 kb on + strand at 1735.239 kb on - strand at 1735.292 kb on + strand at 1735.293 kb on - strand at 1735.293 kb on - strand at 1735.293 kb on - strand at 1735.411 kb on + strand at 1735.433 kb on + strand at 1735.433 kb on + strand at 1735.487 kb on + strand, within AO356_07770 at 1735.488 kb on - strand, within AO356_07770 at 1735.502 kb on + strand, within AO356_07770 at 1735.502 kb on + strand, within AO356_07770 at 1735.502 kb on + strand, within AO356_07770 at 1735.502 kb on + strand, within AO356_07770 at 1735.503 kb on - strand, within AO356_07770 at 1735.503 kb on - strand, within AO356_07770 at 1735.503 kb on - strand, within AO356_07770 at 1735.580 kb on + strand, within AO356_07770 at 1735.755 kb on + strand, within AO356_07770 at 1735.755 kb on + strand, within AO356_07770 at 1735.756 kb on - strand, within AO356_07770 at 1735.791 kb on - strand, within AO356_07770 at 1735.828 kb on + strand, within AO356_07770 at 1735.865 kb on + strand, within AO356_07770 at 1735.866 kb on - strand, within AO356_07770 at 1735.866 kb on - strand, within AO356_07770 at 1735.911 kb on + strand, within AO356_07770 at 1735.911 kb on + strand, within AO356_07770 at 1735.911 kb on + strand, within AO356_07770 at 1735.912 kb on - strand, within AO356_07770 at 1735.955 kb on + strand, within AO356_07770 at 1735.955 kb on + strand, within AO356_07770 at 1735.955 kb on + strand, within AO356_07770 at 1735.955 kb on + strand, within AO356_07770 at 1735.956 kb on - strand, within AO356_07770 at 1735.956 kb on - strand, within AO356_07770 at 1735.956 kb on - strand, within AO356_07770 at 1736.018 kb on + strand, within AO356_07770 at 1736.018 kb on + strand, within AO356_07770 at 1736.019 kb on - strand, within AO356_07770 at 1736.019 kb on - strand, within AO356_07770 at 1736.035 kb on + strand, within AO356_07770 at 1736.035 kb on + strand, within AO356_07770 at 1736.036 kb on - strand, within AO356_07770 at 1736.096 kb on + strand, within AO356_07770 at 1736.097 kb on - strand, within AO356_07770 at 1736.097 kb on - strand, within AO356_07770 at 1736.159 kb on - strand, within AO356_07770 at 1736.192 kb on + strand, within AO356_07770 at 1736.193 kb on - strand, within AO356_07770 at 1736.322 kb on - strand, within AO356_07770 at 1736.381 kb on + strand, within AO356_07770 at 1736.382 kb on - strand, within AO356_07770 at 1736.434 kb on + strand, within AO356_07770 at 1736.619 kb on + strand, within AO356_07770 at 1736.619 kb on + strand, within AO356_07770 at 1736.748 kb on - strand, within AO356_07770 at 1736.748 kb on - strand, within AO356_07770 at 1736.748 kb on - strand, within AO356_07770 at 1736.813 kb on + strand, within AO356_07770 at 1736.888 kb on + strand, within AO356_07770 at 1736.888 kb on + strand, within AO356_07770 at 1736.889 kb on - strand, within AO356_07770 at 1736.945 kb on + strand, within AO356_07770 at 1736.993 kb on + strand, within AO356_07770 at 1736.993 kb on + strand, within AO356_07770 at 1736.993 kb on + strand, within AO356_07770 at 1736.994 kb on - strand, within AO356_07770 at 1736.994 kb on - strand, within AO356_07770 at 1736.994 kb on - strand, within AO356_07770 at 1736.994 kb on - strand, within AO356_07770 at 1736.994 kb on - strand, within AO356_07770 at 1736.994 kb on - strand, within AO356_07770 at 1736.996 kb on + strand, within AO356_07770 at 1736.997 kb on - strand, within AO356_07770 at 1736.997 kb on - strand, within AO356_07770 at 1737.000 kb on - strand, within AO356_07770 at 1737.012 kb on - strand, within AO356_07770 at 1737.080 kb on + strand, within AO356_07770 at 1737.080 kb on + strand, within AO356_07770 at 1737.081 kb on - strand, within AO356_07770 at 1737.081 kb on - strand, within AO356_07770 at 1737.081 kb on - strand, within AO356_07770 at 1737.217 kb on + strand, within AO356_07770 at 1737.356 kb on + strand, within AO356_07770 at 1737.373 kb on + strand, within AO356_07770 at 1737.402 kb on + strand, within AO356_07770 at 1737.413 kb on + strand, within AO356_07770 at 1737.414 kb on - strand, within AO356_07770 at 1737.414 kb on - strand, within AO356_07770 at 1737.414 kb on - strand, within AO356_07770 at 1737.414 kb on - strand, within AO356_07770 at 1737.443 kb on + strand, within AO356_07770 at 1737.443 kb on + strand, within AO356_07770 at 1737.443 kb on + strand, within AO356_07770 at 1737.461 kb on + strand, within AO356_07770 at 1737.461 kb on + strand, within AO356_07770 at 1737.461 kb on + strand, within AO356_07770 at 1737.462 kb on - strand, within AO356_07770 at 1737.462 kb on - strand, within AO356_07770 at 1737.462 kb on - strand, within AO356_07770 at 1737.462 kb on - strand, within AO356_07770 at 1737.476 kb on - strand, within AO356_07770 at 1737.485 kb on + strand, within AO356_07770 at 1737.485 kb on + strand, within AO356_07770 at 1737.486 kb on - strand, within AO356_07770 at 1737.486 kb on - strand, within AO356_07770 at 1737.486 kb on - strand, within AO356_07770 at 1737.510 kb on - strand, within AO356_07770 at 1737.539 kb on - strand, within AO356_07770 at 1737.539 kb on - strand, within AO356_07770 at 1737.564 kb on + strand, within AO356_07770 at 1737.564 kb on + strand, within AO356_07770 at 1737.564 kb on + strand, within AO356_07770 at 1737.564 kb on + strand, within AO356_07770 at 1737.564 kb on + strand, within AO356_07770 at 1737.565 kb on - strand, within AO356_07770 at 1737.620 kb on + strand, within AO356_07770 at 1737.620 kb on + strand, within AO356_07770 at 1737.620 kb on + strand, within AO356_07770 at 1737.621 kb on - strand, within AO356_07770 at 1737.621 kb on - strand, within AO356_07770 at 1737.621 kb on - strand, within AO356_07770 at 1737.621 kb on - strand, within AO356_07770 at 1737.621 kb on - strand, within AO356_07770 at 1737.661 kb on + strand, within AO356_07770 at 1737.662 kb on - strand, within AO356_07770 at 1737.662 kb on - strand, within AO356_07770 at 1737.662 kb on - strand, within AO356_07770 at 1737.902 kb on + strand at 1737.902 kb on + strand at 1737.903 kb on - strand at 1737.903 kb on - strand at 1737.903 kb on - strand at 1737.903 kb on - strand at 1737.903 kb on - strand at 1737.903 kb on - strand at 1737.922 kb on + strand at 1738.046 kb on + strand at 1738.047 kb on - strand at 1738.047 kb on - strand at 1738.267 kb on + strand, within AO356_07775 at 1738.268 kb on - strand, within AO356_07775 at 1738.268 kb on - strand, within AO356_07775 at 1738.330 kb on + strand, within AO356_07775 at 1738.330 kb on + strand, within AO356_07775 at 1738.330 kb on + strand, within AO356_07775 at 1738.330 kb on + strand, within AO356_07775 at 1738.331 kb on - strand, within AO356_07775 at 1738.331 kb on - strand, within AO356_07775 at 1738.425 kb on + strand at 1738.468 kb on + strand at 1738.501 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.509 kb on - strand at 1738.509 kb on - strand at 1738.509 kb on - strand at 1738.943 kb on + strand, within AO356_07780 at 1738.944 kb on - strand, within AO356_07780
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM remove 1,734,163 - AO356_07765 0.78 -0.1 1,734,163 - AO356_07765 0.78 -0.5 1,734,219 + AO356_07765 0.79 -0.3 1,734,219 + AO356_07765 0.79 +0.3 1,734,220 - AO356_07765 0.79 +0.6 1,734,225 + AO356_07765 0.79 +0.1 1,734,271 + AO356_07765 0.80 +0.4 1,734,272 - AO356_07765 0.80 +0.3 1,734,272 - AO356_07765 0.80 -0.7 1,734,305 - AO356_07765 0.81 +0.7 1,734,451 - AO356_07765 0.84 -0.4 1,734,451 - AO356_07765 0.84 +0.8 1,734,453 + AO356_07765 0.84 -0.1 1,734,453 + AO356_07765 0.84 -0.7 1,734,789 + -0.1 1,734,789 + -0.7 1,734,789 + +1.4 1,734,789 + -1.5 1,734,789 + +0.9 1,734,789 + -0.6 1,734,790 - +0.4 1,734,790 - -0.0 1,734,790 - +0.2 1,734,790 - +0.3 1,734,885 + +0.2 1,734,885 + -0.7 1,734,886 - +0.4 1,734,886 - +0.7 1,734,911 + +2.1 1,734,911 + +0.2 1,734,911 + +0.3 1,734,912 - -0.5 1,734,915 + +0.6 1,734,916 - +0.7 1,734,916 - +0.5 1,734,916 - -0.3 1,734,916 - -0.2 1,734,924 + +0.9 1,734,925 - -0.1 1,734,925 - +0.8 1,734,925 - +1.2 1,734,996 + -0.8 1,734,997 - -0.9 1,734,997 - +0.9 1,734,997 - +0.5 1,735,020 + -0.6 1,735,020 + -0.2 1,735,020 + +0.1 1,735,020 + -0.0 1,735,021 - +1.0 1,735,021 - -1.5 1,735,021 - -1.2 1,735,021 - -0.1 1,735,053 + +0.0 1,735,054 - +0.9 1,735,054 - +0.7 1,735,067 + -0.4 1,735,083 + +0.1 1,735,083 + +0.1 1,735,238 + -0.5 1,735,239 - -0.3 1,735,292 + -0.2 1,735,293 - +0.3 1,735,293 - +0.6 1,735,293 - -0.4 1,735,411 + +0.3 1,735,433 + +0.7 1,735,433 + -0.4 1,735,487 + AO356_07770 0.12 +0.0 1,735,488 - AO356_07770 0.12 +0.0 1,735,502 + AO356_07770 0.12 +0.4 1,735,502 + AO356_07770 0.12 -0.2 1,735,502 + AO356_07770 0.12 +0.4 1,735,502 + AO356_07770 0.12 +0.0 1,735,503 - AO356_07770 0.12 -1.0 1,735,503 - AO356_07770 0.12 -0.7 1,735,503 - AO356_07770 0.12 -0.4 1,735,580 + AO356_07770 0.15 -0.2 1,735,755 + AO356_07770 0.21 +0.0 1,735,755 + AO356_07770 0.21 +0.6 1,735,756 - AO356_07770 0.21 +0.8 1,735,791 - AO356_07770 0.23 +0.6 1,735,828 + AO356_07770 0.24 -0.7 1,735,865 + AO356_07770 0.25 -1.4 1,735,866 - AO356_07770 0.25 -0.1 1,735,866 - AO356_07770 0.25 +0.7 1,735,911 + AO356_07770 0.27 +0.1 1,735,911 + AO356_07770 0.27 +0.7 1,735,911 + AO356_07770 0.27 +0.8 1,735,912 - AO356_07770 0.27 +1.4 1,735,955 + AO356_07770 0.28 -0.2 1,735,955 + AO356_07770 0.28 +0.6 1,735,955 + AO356_07770 0.28 -0.2 1,735,955 + AO356_07770 0.28 +0.2 1,735,956 - AO356_07770 0.28 +0.0 1,735,956 - AO356_07770 0.28 +0.5 1,735,956 - AO356_07770 0.28 -0.2 1,736,018 + AO356_07770 0.31 +0.2 1,736,018 + AO356_07770 0.31 -1.0 1,736,019 - AO356_07770 0.31 +0.4 1,736,019 - AO356_07770 0.31 +1.7 1,736,035 + AO356_07770 0.31 +0.2 1,736,035 + AO356_07770 0.31 +2.1 1,736,036 - AO356_07770 0.31 -0.5 1,736,096 + AO356_07770 0.33 +0.6 1,736,097 - AO356_07770 0.33 -0.1 1,736,097 - AO356_07770 0.33 +0.1 1,736,159 - AO356_07770 0.36 -0.7 1,736,192 + AO356_07770 0.37 -0.5 1,736,193 - AO356_07770 0.37 -0.5 1,736,322 - AO356_07770 0.42 +0.1 1,736,381 + AO356_07770 0.44 +1.1 1,736,382 - AO356_07770 0.44 +0.7 1,736,434 + AO356_07770 0.46 -1.1 1,736,619 + AO356_07770 0.52 +0.5 1,736,619 + AO356_07770 0.52 +0.3 1,736,748 - AO356_07770 0.57 -0.8 1,736,748 - AO356_07770 0.57 +0.4 1,736,748 - AO356_07770 0.57 -1.1 1,736,813 + AO356_07770 0.59 -0.9 1,736,888 + AO356_07770 0.62 +0.9 1,736,888 + AO356_07770 0.62 -0.4 1,736,889 - AO356_07770 0.62 +0.3 1,736,945 + AO356_07770 0.64 +0.7 1,736,993 + AO356_07770 0.65 +0.1 1,736,993 + AO356_07770 0.65 -0.4 1,736,993 + AO356_07770 0.65 -0.1 1,736,994 - AO356_07770 0.66 -0.3 1,736,994 - AO356_07770 0.66 +0.3 1,736,994 - AO356_07770 0.66 -0.1 1,736,994 - AO356_07770 0.66 -0.9 1,736,994 - AO356_07770 0.66 +0.2 1,736,994 - AO356_07770 0.66 +1.5 1,736,996 + AO356_07770 0.66 -0.4 1,736,997 - AO356_07770 0.66 -0.5 1,736,997 - AO356_07770 0.66 -0.8 1,737,000 - AO356_07770 0.66 +1.4 1,737,012 - AO356_07770 0.66 -0.3 1,737,080 + AO356_07770 0.69 +0.7 1,737,080 + AO356_07770 0.69 -0.8 1,737,081 - AO356_07770 0.69 +0.8 1,737,081 - AO356_07770 0.69 +0.2 1,737,081 - AO356_07770 0.69 -2.4 1,737,217 + AO356_07770 0.73 -0.0 1,737,356 + AO356_07770 0.78 +0.8 1,737,373 + AO356_07770 0.79 -0.3 1,737,402 + AO356_07770 0.80 -0.6 1,737,413 + AO356_07770 0.80 -0.2 1,737,414 - AO356_07770 0.81 +0.1 1,737,414 - AO356_07770 0.81 -0.1 1,737,414 - AO356_07770 0.81 +0.1 1,737,414 - AO356_07770 0.81 +0.0 1,737,443 + AO356_07770 0.82 -0.7 1,737,443 + AO356_07770 0.82 -0.9 1,737,443 + AO356_07770 0.82 +1.8 1,737,461 + AO356_07770 0.82 -0.1 1,737,461 + AO356_07770 0.82 +0.3 1,737,461 + AO356_07770 0.82 -0.3 1,737,462 - AO356_07770 0.82 +0.7 1,737,462 - AO356_07770 0.82 +0.3 1,737,462 - AO356_07770 0.82 +0.7 1,737,462 - AO356_07770 0.82 -1.3 1,737,476 - AO356_07770 0.83 -0.9 1,737,485 + AO356_07770 0.83 -1.3 1,737,485 + AO356_07770 0.83 +0.9 1,737,486 - AO356_07770 0.83 +0.8 1,737,486 - AO356_07770 0.83 +0.4 1,737,486 - AO356_07770 0.83 +0.9 1,737,510 - AO356_07770 0.84 -0.2 1,737,539 - AO356_07770 0.85 +0.8 1,737,539 - AO356_07770 0.85 +0.8 1,737,564 + AO356_07770 0.86 -1.6 1,737,564 + AO356_07770 0.86 -0.2 1,737,564 + AO356_07770 0.86 -0.3 1,737,564 + AO356_07770 0.86 +0.6 1,737,564 + AO356_07770 0.86 +0.7 1,737,565 - AO356_07770 0.86 -0.1 1,737,620 + AO356_07770 0.88 +0.3 1,737,620 + AO356_07770 0.88 -1.2 1,737,620 + AO356_07770 0.88 +0.2 1,737,621 - AO356_07770 0.88 -0.4 1,737,621 - AO356_07770 0.88 -0.8 1,737,621 - AO356_07770 0.88 -0.3 1,737,621 - AO356_07770 0.88 +0.5 1,737,621 - AO356_07770 0.88 -0.6 1,737,661 + AO356_07770 0.89 +0.0 1,737,662 - AO356_07770 0.89 -0.2 1,737,662 - AO356_07770 0.89 -0.5 1,737,662 - AO356_07770 0.89 +0.7 1,737,902 + -0.2 1,737,902 + +0.6 1,737,903 - -0.3 1,737,903 - -0.3 1,737,903 - +0.9 1,737,903 - +0.7 1,737,903 - -0.5 1,737,903 - -0.1 1,737,922 + -1.3 1,738,046 + -0.3 1,738,047 - +0.1 1,738,047 - +0.9 1,738,267 + AO356_07775 0.65 -0.2 1,738,268 - AO356_07775 0.66 +1.0 1,738,268 - AO356_07775 0.66 +0.2 1,738,330 + AO356_07775 0.82 -1.8 1,738,330 + AO356_07775 0.82 -0.3 1,738,330 + AO356_07775 0.82 +0.2 1,738,330 + AO356_07775 0.82 -1.4 1,738,331 - AO356_07775 0.83 -1.4 1,738,331 - AO356_07775 0.83 -1.4 1,738,425 + -0.6 1,738,468 + -0.0 1,738,501 + +0.2 1,738,508 + -0.3 1,738,508 + -0.1 1,738,508 + +0.6 1,738,508 + -0.1 1,738,508 + +0.3 1,738,508 + -0.3 1,738,508 + -3.3 1,738,508 + +0.2 1,738,509 - -1.4 1,738,509 - +1.8 1,738,509 - -0.8 1,738,943 + AO356_07780 0.29 +0.7 1,738,944 - AO356_07780 0.29 +0.2
Or see this region's nucleotide sequence