Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04127 and SMc04126 overlap by 4 nucleotides SMc04126 and SMc04125 are separated by 4 nucleotides SMc04125 and SMc04124 are separated by 3 nucleotides
SMc04127: SMc04127 - ABC transporter ATP-binding protein, at 147,807 to 149,342
SMc04127
SMc04126: SMc04126 - ABC transporter permease, at 149,339 to 150,472
SMc04126
SMc04125: SMc04125 - ABC transporter permease, at 150,477 to 151,448
SMc04125
SMc04124: SMc04124 - cytidine deaminase, at 151,452 to 151,910
SMc04124
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.403 kb on + strand, within SMc04127 at 148.403 kb on + strand, within SMc04127 at 148.897 kb on - strand, within SMc04127 at 148.980 kb on + strand, within SMc04127 at 148.980 kb on + strand, within SMc04127 at 148.980 kb on + strand, within SMc04127 at 148.985 kb on + strand, within SMc04127 at 148.985 kb on + strand, within SMc04127 at 149.113 kb on + strand, within SMc04127 at 149.114 kb on - strand, within SMc04127 at 149.114 kb on - strand, within SMc04127 at 149.345 kb on - strand at 149.352 kb on - strand at 149.352 kb on - strand at 149.378 kb on + strand at 149.379 kb on - strand at 149.472 kb on - strand, within SMc04126 at 149.472 kb on - strand, within SMc04126 at 149.509 kb on + strand, within SMc04126 at 149.509 kb on + strand, within SMc04126 at 149.510 kb on - strand, within SMc04126 at 149.615 kb on + strand, within SMc04126 at 149.616 kb on + strand, within SMc04126 at 149.616 kb on - strand, within SMc04126 at 149.675 kb on + strand, within SMc04126 at 149.675 kb on + strand, within SMc04126 at 149.676 kb on - strand, within SMc04126 at 149.770 kb on + strand, within SMc04126 at 149.770 kb on + strand, within SMc04126 at 149.771 kb on - strand, within SMc04126 at 149.804 kb on - strand, within SMc04126 at 149.822 kb on + strand, within SMc04126 at 149.823 kb on - strand, within SMc04126 at 149.823 kb on - strand, within SMc04126 at 149.823 kb on - strand, within SMc04126 at 150.117 kb on + strand, within SMc04126 at 150.924 kb on + strand, within SMc04125 at 150.925 kb on - strand, within SMc04125 at 150.960 kb on + strand, within SMc04125 at 150.960 kb on + strand, within SMc04125 at 150.961 kb on - strand, within SMc04125 at 151.003 kb on - strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.198 kb on - strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.245 kb on - strand, within SMc04125 at 151.362 kb on - strand at 151.362 kb on - strand at 151.426 kb on + strand at 151.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 148,403 + SMc04127 0.39 +0.9 148,403 + SMc04127 0.39 -0.1 148,897 - SMc04127 0.71 -0.4 148,980 + SMc04127 0.76 +1.1 148,980 + SMc04127 0.76 +0.6 148,980 + SMc04127 0.76 +0.1 148,985 + SMc04127 0.77 +0.6 148,985 + SMc04127 0.77 -0.7 149,113 + SMc04127 0.85 +0.9 149,114 - SMc04127 0.85 -0.9 149,114 - SMc04127 0.85 +1.0 149,345 - +0.0 149,352 - -0.1 149,352 - +0.3 149,378 + -0.9 149,379 - -0.1 149,472 - SMc04126 0.12 -0.6 149,472 - SMc04126 0.12 +0.9 149,509 + SMc04126 0.15 +0.6 149,509 + SMc04126 0.15 -2.2 149,510 - SMc04126 0.15 -0.5 149,615 + SMc04126 0.24 +0.6 149,616 + SMc04126 0.24 +0.2 149,616 - SMc04126 0.24 -1.2 149,675 + SMc04126 0.30 -0.3 149,675 + SMc04126 0.30 -1.2 149,676 - SMc04126 0.30 +0.7 149,770 + SMc04126 0.38 -1.0 149,770 + SMc04126 0.38 -0.1 149,771 - SMc04126 0.38 +0.1 149,804 - SMc04126 0.41 +0.3 149,822 + SMc04126 0.43 -0.1 149,823 - SMc04126 0.43 -0.1 149,823 - SMc04126 0.43 -0.3 149,823 - SMc04126 0.43 +0.1 150,117 + SMc04126 0.69 -0.8 150,924 + SMc04125 0.46 +0.3 150,925 - SMc04125 0.46 -0.2 150,960 + SMc04125 0.50 -0.2 150,960 + SMc04125 0.50 +2.2 150,961 - SMc04125 0.50 +0.4 151,003 - SMc04125 0.54 +0.0 151,197 + SMc04125 0.74 -0.2 151,197 + SMc04125 0.74 +0.6 151,197 + SMc04125 0.74 +0.3 151,198 - SMc04125 0.74 +0.9 151,244 + SMc04125 0.79 -0.4 151,244 + SMc04125 0.79 -0.2 151,244 + SMc04125 0.79 -0.3 151,245 - SMc04125 0.79 -0.1 151,362 - -0.7 151,362 - -0.1 151,426 + +0.1 151,432 - -0.1
Or see this region's nucleotide sequence