Strain Fitness in Sinorhizobium meliloti 1021 around SMc04019
Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | copper (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
3,016,199 | + | SMc04018 | 0.71 | +0.4 | |
3,016,200 | - | SMc04018 | 0.71 | +0.2 | |
3,016,295 | + | SMc04018 | 0.76 | +0.3 | |
3,016,373 | + | SMc04018 | 0.80 | -1.0 | |
3,016,373 | + | SMc04018 | 0.80 | -0.6 | |
3,016,380 | - | SMc04018 | 0.80 | +0.3 | |
3,016,413 | - | SMc04018 | 0.82 | +0.0 | |
3,016,413 | - | SMc04018 | 0.82 | +0.6 | |
3,016,442 | + | SMc04018 | 0.83 | +0.6 | |
3,016,652 | + | +0.1 | |||
3,016,652 | + | -0.8 | |||
3,017,932 | + | -0.5 | |||
3,017,932 | + | -0.4 | |||
3,017,932 | + | +0.2 | |||
3,017,932 | + | -0.3 | |||
3,017,932 | + | +0.3 | |||
3,017,933 | - | +0.7 | |||
3,018,018 | - | +0.0 | |||
3,018,099 | - | -0.8 | |||
3,018,100 | + | +0.2 | |||
3,018,100 | + | +0.6 | |||
3,018,100 | + | +0.2 | |||
3,018,101 | - | -0.2 | |||
3,018,123 | - | SMc04020 | 0.12 | -0.6 | |
3,018,285 | + | SMc04020 | 0.28 | -0.8 | |
3,018,442 | - | SMc04020 | 0.44 | +0.1 | |
3,018,771 | - | SMc04020 | 0.78 | +0.5 | |
3,018,789 | - | SMc04020 | 0.79 | +1.1 | |
3,018,886 | - | SMc04020 | 0.89 | +1.8 |
Or see this region's nucleotide sequence