Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02874 and SMc02875 are separated by 199 nucleotides SMc02875 and SMc02876 overlap by 4 nucleotides SMc02876 and SMc02877 are separated by 93 nucleotides
SMc02874: SMc02874 - N-acetylmuramic acid 6-phosphate etherase, at 230,235 to 231,131
SMc02874
SMc02875: SMc02875 - N-acetylglucosamine kinase (EC 2.7.1.59) <small>(from data)</small>, at 231,331 to 232,215
SMc02875
SMc02876: SMc02876 - transcriptional regulator, at 232,212 to 232,976
SMc02876
SMc02877: SMc02877 - hypothetical protein, at 233,070 to 234,092
SMc02877
Position (kb) 231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 230.403 kb on + strand, within SMc02874 at 230.404 kb on - strand, within SMc02874 at 230.702 kb on - strand, within SMc02874 at 230.800 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.869 kb on - strand, within SMc02874 at 230.869 kb on - strand, within SMc02874 at 230.875 kb on + strand, within SMc02874 at 231.250 kb on + strand at 231.386 kb on + strand at 231.438 kb on + strand, within SMc02875 at 231.445 kb on - strand, within SMc02875 at 231.473 kb on + strand, within SMc02875 at 231.586 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.707 kb on - strand, within SMc02875 at 231.707 kb on - strand, within SMc02875 at 231.736 kb on + strand, within SMc02875 at 231.737 kb on - strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.834 kb on - strand, within SMc02875 at 232.938 kb on + strand at 233.020 kb on + strand at 233.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 230,403 + SMc02874 0.19 +0.2 230,404 - SMc02874 0.19 +1.4 230,702 - SMc02874 0.52 -0.7 230,800 + SMc02874 0.63 +0.0 230,868 + SMc02874 0.71 +0.0 230,868 + SMc02874 0.71 -0.2 230,868 + SMc02874 0.71 +0.1 230,869 - SMc02874 0.71 +2.5 230,869 - SMc02874 0.71 -0.1 230,875 + SMc02874 0.71 -0.2 231,250 + -0.6 231,386 + -0.3 231,438 + SMc02875 0.12 -1.7 231,445 - SMc02875 0.13 -1.3 231,473 + SMc02875 0.16 -0.5 231,586 + SMc02875 0.29 -0.5 231,706 + SMc02875 0.42 -0.3 231,706 + SMc02875 0.42 +0.1 231,706 + SMc02875 0.42 +0.4 231,707 - SMc02875 0.42 -1.9 231,707 - SMc02875 0.42 -0.9 231,736 + SMc02875 0.46 -0.5 231,737 - SMc02875 0.46 +0.1 231,833 + SMc02875 0.57 -0.3 231,833 + SMc02875 0.57 -0.7 231,833 + SMc02875 0.57 -1.1 231,833 + SMc02875 0.57 -0.2 231,833 + SMc02875 0.57 -0.2 231,834 - SMc02875 0.57 -1.6 232,938 + -2.4 233,020 + +0.1 233,048 + +0.3
Or see this region's nucleotide sequence