Strain Fitness in Sinorhizobium meliloti 1021 around SMc02875
Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | copper (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
230,403 | + | SMc02874 | 0.19 | +0.2 | |
230,404 | - | SMc02874 | 0.19 | +1.4 | |
230,702 | - | SMc02874 | 0.52 | -0.7 | |
230,800 | + | SMc02874 | 0.63 | +0.0 | |
230,868 | + | SMc02874 | 0.71 | +0.0 | |
230,868 | + | SMc02874 | 0.71 | -0.2 | |
230,868 | + | SMc02874 | 0.71 | +0.1 | |
230,869 | - | SMc02874 | 0.71 | +2.5 | |
230,869 | - | SMc02874 | 0.71 | -0.1 | |
230,875 | + | SMc02874 | 0.71 | -0.2 | |
231,250 | + | -0.6 | |||
231,386 | + | -0.3 | |||
231,438 | + | SMc02875 | 0.12 | -1.7 | |
231,445 | - | SMc02875 | 0.13 | -1.3 | |
231,473 | + | SMc02875 | 0.16 | -0.5 | |
231,586 | + | SMc02875 | 0.29 | -0.5 | |
231,706 | + | SMc02875 | 0.42 | -0.3 | |
231,706 | + | SMc02875 | 0.42 | +0.1 | |
231,706 | + | SMc02875 | 0.42 | +0.4 | |
231,707 | - | SMc02875 | 0.42 | -1.9 | |
231,707 | - | SMc02875 | 0.42 | -0.9 | |
231,736 | + | SMc02875 | 0.46 | -0.5 | |
231,737 | - | SMc02875 | 0.46 | +0.1 | |
231,833 | + | SMc02875 | 0.57 | -0.3 | |
231,833 | + | SMc02875 | 0.57 | -0.7 | |
231,833 | + | SMc02875 | 0.57 | -1.1 | |
231,833 | + | SMc02875 | 0.57 | -0.2 | |
231,833 | + | SMc02875 | 0.57 | -0.2 | |
231,834 | - | SMc02875 | 0.57 | -1.6 | |
232,938 | + | -2.4 | |||
233,020 | + | +0.1 | |||
233,048 | + | +0.3 |
Or see this region's nucleotide sequence