Strain Fitness in Sinorhizobium meliloti 1021 around SMc02497

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02499 and SMc02498 overlap by 1 nucleotidesSMc02498 and SMc02497 are separated by 238 nucleotidesSMc02497 and SMc02496 are separated by 122 nucleotides SMc02499: SMc02499 - F0F1 ATP synthase subunit alpha, at 3,293,593 to 3,295,122 SMc02499 SMc02498: SMc02498 - F0F1 ATP synthase subunit delta, at 3,295,122 to 3,295,688 SMc02498 SMc02497: SMc02497 - hypothetical protein, at 3,295,927 to 3,296,313 SMc02497 SMc02496: SMc02496 - primosome assembly protein PriA, at 3,296,436 to 3,298,640 SMc02496 Position (kb) 3295 3296 3297Strain fitness (log2 ratio) -2 -1 0 1at 3296.081 kb on + strand, within SMc02497at 3296.081 kb on + strand, within SMc02497at 3296.303 kb on + strandat 3296.382 kb on + strandat 3296.382 kb on + strandat 3296.387 kb on + strandat 3296.388 kb on - strandat 3296.388 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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3,296,081 + SMc02497 0.40 -2.6
3,296,081 + SMc02497 0.40 -1.9
3,296,303 + +0.2
3,296,382 + -2.0
3,296,382 + +0.3
3,296,387 + -2.4
3,296,388 - +0.2
3,296,388 - +0.2

Or see this region's nucleotide sequence