Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02078 and SMc02077 are separated by 58 nucleotides SMc02077 and SMc02076 are separated by 204 nucleotides
SMc02078: SMc02078 - exopolysaccharide biosynthesis regulatory protein, at 1,637,310 to 1,638,116
SMc02078
SMc02077: SMc02077 - exodeoxyribonuclease III protein, at 1,638,175 to 1,638,966
SMc02077
SMc02076: SMc02076 - cardiolipin synthetase transmembrane protein, at 1,639,171 to 1,640,634
SMc02076
Position (kb)
1638
1639 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1637.190 kb on + strand at 1637.246 kb on + strand at 1638.152 kb on - strand at 1638.205 kb on + strand at 1638.452 kb on + strand, within SMc02077 at 1638.452 kb on + strand, within SMc02077 at 1638.641 kb on + strand, within SMc02077 at 1638.642 kb on - strand, within SMc02077 at 1638.642 kb on - strand, within SMc02077 at 1639.124 kb on + strand at 1639.125 kb on - strand at 1639.158 kb on + strand at 1639.161 kb on - strand at 1639.192 kb on + strand at 1639.193 kb on - strand at 1639.568 kb on - strand, within SMc02076 at 1639.568 kb on - strand, within SMc02076 at 1639.626 kb on + strand, within SMc02076 at 1639.626 kb on + strand, within SMc02076 at 1639.756 kb on + strand, within SMc02076 at 1639.756 kb on + strand, within SMc02076 at 1639.757 kb on - strand, within SMc02076 at 1639.800 kb on + strand, within SMc02076 at 1639.801 kb on - strand, within SMc02076 at 1639.826 kb on - strand, within SMc02076
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,637,190 + +1.3 1,637,246 + +1.6 1,638,152 - +1.7 1,638,205 + -1.0 1,638,452 + SMc02077 0.35 -1.2 1,638,452 + SMc02077 0.35 -1.8 1,638,641 + SMc02077 0.59 -0.5 1,638,642 - SMc02077 0.59 -0.3 1,638,642 - SMc02077 0.59 -1.2 1,639,124 + +0.4 1,639,125 - -0.3 1,639,158 + +0.1 1,639,161 - -0.2 1,639,192 + -0.2 1,639,193 - -0.1 1,639,568 - SMc02076 0.27 +0.1 1,639,568 - SMc02076 0.27 -0.1 1,639,626 + SMc02076 0.31 -0.3 1,639,626 + SMc02076 0.31 +0.4 1,639,756 + SMc02076 0.40 -0.2 1,639,756 + SMc02076 0.40 -3.0 1,639,757 - SMc02076 0.40 -0.2 1,639,800 + SMc02076 0.43 -1.6 1,639,801 - SMc02076 0.43 -0.7 1,639,826 - SMc02076 0.45 +0.3
Or see this region's nucleotide sequence