Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01606 and SMc01607 overlap by 4 nucleotides SMc01607 and SMc01608 are separated by 4 nucleotides SMc01608 and SMc01609 are separated by 315 nucleotides
SMc01606: SMc01606 - permease, at 2,395,401 to 2,396,207
SMc01606
SMc01607: SMc01607 - permease, at 2,396,204 to 2,396,992
SMc01607
SMc01608: SMc01608 - ABC transporter ATP-binding protein, at 2,396,997 to 2,398,058
SMc01608
SMc01609: SMc01609 - riboflavin synthase subunit beta, at 2,398,374 to 2,398,901
SMc01609
Position (kb)
2396
2397
2398
2399 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2396.070 kb on + strand, within SMc01606 at 2396.071 kb on - strand, within SMc01606 at 2396.100 kb on - strand, within SMc01606 at 2396.167 kb on - strand at 2396.255 kb on + strand at 2396.315 kb on + strand, within SMc01607 at 2396.315 kb on + strand, within SMc01607 at 2396.438 kb on + strand, within SMc01607 at 2396.439 kb on - strand, within SMc01607 at 2396.615 kb on + strand, within SMc01607 at 2396.637 kb on - strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.639 kb on - strand, within SMc01607 at 2396.639 kb on - strand, within SMc01607 at 2396.643 kb on - strand, within SMc01607 at 2396.734 kb on - strand, within SMc01607 at 2396.819 kb on - strand, within SMc01607 at 2396.885 kb on + strand, within SMc01607 at 2396.885 kb on + strand, within SMc01607 at 2396.886 kb on - strand, within SMc01607 at 2397.020 kb on + strand at 2397.056 kb on + strand at 2397.057 kb on - strand at 2397.246 kb on + strand, within SMc01608 at 2397.246 kb on + strand, within SMc01608 at 2397.246 kb on + strand, within SMc01608 at 2397.364 kb on + strand at 2397.364 kb on + strand, within SMc01608 at 2397.391 kb on - strand, within SMc01608 at 2397.559 kb on + strand, within SMc01608 at 2397.660 kb on + strand, within SMc01608 at 2397.661 kb on - strand, within SMc01608 at 2397.661 kb on - strand, within SMc01608 at 2397.896 kb on - strand, within SMc01608 at 2397.965 kb on + strand at 2398.166 kb on + strand at 2398.315 kb on - strand at 2398.315 kb on - strand at 2398.315 kb on - strand at 2398.435 kb on + strand, within SMc01609 at 2398.435 kb on + strand, within SMc01609 at 2398.674 kb on + strand, within SMc01609 at 2398.675 kb on - strand, within SMc01609 at 2398.675 kb on - strand, within SMc01609 at 2398.675 kb on - strand, within SMc01609 at 2398.734 kb on - strand, within SMc01609
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 2,396,070 + SMc01606 0.83 -1.0 2,396,071 - SMc01606 0.83 -1.0 2,396,100 - SMc01606 0.87 -1.2 2,396,167 - -0.6 2,396,255 + -0.2 2,396,315 + SMc01607 0.14 -1.6 2,396,315 + SMc01607 0.14 -0.8 2,396,438 + SMc01607 0.30 -0.6 2,396,439 - SMc01607 0.30 +0.5 2,396,615 + SMc01607 0.52 -0.7 2,396,637 - SMc01607 0.55 -0.7 2,396,638 + SMc01607 0.55 -1.4 2,396,638 + SMc01607 0.55 -0.7 2,396,638 + SMc01607 0.55 -0.6 2,396,638 + SMc01607 0.55 -1.3 2,396,638 + SMc01607 0.55 -0.1 2,396,639 - SMc01607 0.55 -0.2 2,396,639 - SMc01607 0.55 -1.5 2,396,643 - SMc01607 0.56 -0.3 2,396,734 - SMc01607 0.67 -1.0 2,396,819 - SMc01607 0.78 -1.2 2,396,885 + SMc01607 0.86 +0.5 2,396,885 + SMc01607 0.86 -1.8 2,396,886 - SMc01607 0.86 -1.1 2,397,020 + -0.7 2,397,056 + +0.1 2,397,057 - -0.5 2,397,246 + SMc01608 0.23 -1.5 2,397,246 + SMc01608 0.23 +0.2 2,397,246 + SMc01608 0.23 -0.9 2,397,364 + +3.2 2,397,364 + SMc01608 0.35 -0.8 2,397,391 - SMc01608 0.37 -1.6 2,397,559 + SMc01608 0.53 -0.3 2,397,660 + SMc01608 0.62 -0.4 2,397,661 - SMc01608 0.63 -1.5 2,397,661 - SMc01608 0.63 -0.8 2,397,896 - SMc01608 0.85 -2.0 2,397,965 + -0.9 2,398,166 + -0.2 2,398,315 - -0.3 2,398,315 - +1.6 2,398,315 - +1.4 2,398,435 + SMc01609 0.12 +0.4 2,398,435 + SMc01609 0.12 +1.0 2,398,674 + SMc01609 0.57 -0.3 2,398,675 - SMc01609 0.57 -0.7 2,398,675 - SMc01609 0.57 -0.9 2,398,675 - SMc01609 0.57 -0.7 2,398,734 - SMc01609 0.68 +0.4
Or see this region's nucleotide sequence