Strain Fitness in Sinorhizobium meliloti 1021 around SMc01608

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01606 and SMc01607 overlap by 4 nucleotidesSMc01607 and SMc01608 are separated by 4 nucleotidesSMc01608 and SMc01609 are separated by 315 nucleotides SMc01606: SMc01606 - permease, at 2,395,401 to 2,396,207 SMc01606 SMc01607: SMc01607 - permease, at 2,396,204 to 2,396,992 SMc01607 SMc01608: SMc01608 - ABC transporter ATP-binding protein, at 2,396,997 to 2,398,058 SMc01608 SMc01609: SMc01609 - riboflavin synthase subunit beta, at 2,398,374 to 2,398,901 SMc01609 Position (kb) 2396 2397 2398 2399Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2396.070 kb on + strand, within SMc01606at 2396.071 kb on - strand, within SMc01606at 2396.100 kb on - strand, within SMc01606at 2396.167 kb on - strandat 2396.255 kb on + strandat 2396.315 kb on + strand, within SMc01607at 2396.315 kb on + strand, within SMc01607at 2396.438 kb on + strand, within SMc01607at 2396.439 kb on - strand, within SMc01607at 2396.615 kb on + strand, within SMc01607at 2396.637 kb on - strand, within SMc01607at 2396.638 kb on + strand, within SMc01607at 2396.638 kb on + strand, within SMc01607at 2396.638 kb on + strand, within SMc01607at 2396.638 kb on + strand, within SMc01607at 2396.638 kb on + strand, within SMc01607at 2396.639 kb on - strand, within SMc01607at 2396.639 kb on - strand, within SMc01607at 2396.643 kb on - strand, within SMc01607at 2396.734 kb on - strand, within SMc01607at 2396.819 kb on - strand, within SMc01607at 2396.885 kb on + strand, within SMc01607at 2396.885 kb on + strand, within SMc01607at 2396.886 kb on - strand, within SMc01607at 2397.020 kb on + strandat 2397.056 kb on + strandat 2397.057 kb on - strandat 2397.246 kb on + strand, within SMc01608at 2397.246 kb on + strand, within SMc01608at 2397.246 kb on + strand, within SMc01608at 2397.364 kb on + strandat 2397.364 kb on + strand, within SMc01608at 2397.391 kb on - strand, within SMc01608at 2397.559 kb on + strand, within SMc01608at 2397.660 kb on + strand, within SMc01608at 2397.661 kb on - strand, within SMc01608at 2397.661 kb on - strand, within SMc01608at 2397.896 kb on - strand, within SMc01608at 2397.965 kb on + strandat 2398.166 kb on + strandat 2398.315 kb on - strandat 2398.315 kb on - strandat 2398.315 kb on - strandat 2398.435 kb on + strand, within SMc01609at 2398.435 kb on + strand, within SMc01609at 2398.674 kb on + strand, within SMc01609at 2398.675 kb on - strand, within SMc01609at 2398.675 kb on - strand, within SMc01609at 2398.675 kb on - strand, within SMc01609at 2398.734 kb on - strand, within SMc01609

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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2,396,070 + SMc01606 0.83 -1.0
2,396,071 - SMc01606 0.83 -1.0
2,396,100 - SMc01606 0.87 -1.2
2,396,167 - -0.6
2,396,255 + -0.2
2,396,315 + SMc01607 0.14 -1.6
2,396,315 + SMc01607 0.14 -0.8
2,396,438 + SMc01607 0.30 -0.6
2,396,439 - SMc01607 0.30 +0.5
2,396,615 + SMc01607 0.52 -0.7
2,396,637 - SMc01607 0.55 -0.7
2,396,638 + SMc01607 0.55 -1.4
2,396,638 + SMc01607 0.55 -0.7
2,396,638 + SMc01607 0.55 -0.6
2,396,638 + SMc01607 0.55 -1.3
2,396,638 + SMc01607 0.55 -0.1
2,396,639 - SMc01607 0.55 -0.2
2,396,639 - SMc01607 0.55 -1.5
2,396,643 - SMc01607 0.56 -0.3
2,396,734 - SMc01607 0.67 -1.0
2,396,819 - SMc01607 0.78 -1.2
2,396,885 + SMc01607 0.86 +0.5
2,396,885 + SMc01607 0.86 -1.8
2,396,886 - SMc01607 0.86 -1.1
2,397,020 + -0.7
2,397,056 + +0.1
2,397,057 - -0.5
2,397,246 + SMc01608 0.23 -1.5
2,397,246 + SMc01608 0.23 +0.2
2,397,246 + SMc01608 0.23 -0.9
2,397,364 + +3.2
2,397,364 + SMc01608 0.35 -0.8
2,397,391 - SMc01608 0.37 -1.6
2,397,559 + SMc01608 0.53 -0.3
2,397,660 + SMc01608 0.62 -0.4
2,397,661 - SMc01608 0.63 -1.5
2,397,661 - SMc01608 0.63 -0.8
2,397,896 - SMc01608 0.85 -2.0
2,397,965 + -0.9
2,398,166 + -0.2
2,398,315 - -0.3
2,398,315 - +1.6
2,398,315 - +1.4
2,398,435 + SMc01609 0.12 +0.4
2,398,435 + SMc01609 0.12 +1.0
2,398,674 + SMc01609 0.57 -0.3
2,398,675 - SMc01609 0.57 -0.7
2,398,675 - SMc01609 0.57 -0.9
2,398,675 - SMc01609 0.57 -0.7
2,398,734 - SMc01609 0.68 +0.4

Or see this region's nucleotide sequence