Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01367 and SMc01366 overlap by 4 nucleotides SMc01366 and SMc01365 are separated by 36 nucleotides SMc01365 and SMc01364 are separated by 2 nucleotides
SMc01367: SMc01367 - hypothetical protein, at 1,413,420 to 1,414,136
SMc01367
SMc01366: SMc01366 - hypothetical protein, at 1,414,133 to 1,414,588
SMc01366
SMc01365: SMc01365 - exoribonuclease II protein, at 1,414,625 to 1,416,994
SMc01365
SMc01364: SMc01364 - DNA topoisomerase I, at 1,416,997 to 1,419,699
SMc01364
Position (kb)
1414
1415
1416
1417 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1413.698 kb on + strand, within SMc01367 at 1413.698 kb on + strand, within SMc01367 at 1413.713 kb on + strand, within SMc01367 at 1413.714 kb on - strand, within SMc01367 at 1413.716 kb on - strand, within SMc01367 at 1413.716 kb on - strand, within SMc01367 at 1413.786 kb on + strand, within SMc01367 at 1413.828 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.962 kb on - strand, within SMc01367 at 1414.310 kb on - strand, within SMc01366 at 1414.336 kb on + strand, within SMc01366 at 1414.336 kb on + strand, within SMc01366 at 1414.338 kb on + strand, within SMc01366 at 1414.338 kb on + strand, within SMc01366 at 1414.379 kb on - strand, within SMc01366 at 1414.379 kb on - strand, within SMc01366 at 1414.380 kb on + strand, within SMc01366 at 1414.781 kb on + strand at 1414.781 kb on + strand at 1414.782 kb on - strand at 1414.863 kb on + strand, within SMc01365 at 1414.864 kb on - strand, within SMc01365 at 1414.889 kb on - strand, within SMc01365 at 1414.889 kb on - strand, within SMc01365 at 1414.892 kb on + strand, within SMc01365 at 1414.893 kb on - strand, within SMc01365 at 1414.893 kb on - strand, within SMc01365 at 1414.893 kb on - strand, within SMc01365 at 1414.895 kb on - strand, within SMc01365 at 1414.895 kb on - strand, within SMc01365 at 1415.026 kb on + strand, within SMc01365 at 1415.081 kb on - strand, within SMc01365 at 1415.112 kb on - strand, within SMc01365 at 1415.112 kb on - strand, within SMc01365 at 1415.202 kb on + strand, within SMc01365 at 1415.203 kb on - strand, within SMc01365 at 1415.233 kb on + strand, within SMc01365 at 1415.247 kb on + strand, within SMc01365 at 1415.298 kb on + strand, within SMc01365 at 1415.299 kb on - strand, within SMc01365 at 1415.442 kb on + strand, within SMc01365 at 1415.442 kb on + strand, within SMc01365 at 1415.443 kb on - strand, within SMc01365 at 1415.443 kb on - strand, within SMc01365 at 1415.644 kb on + strand, within SMc01365 at 1415.649 kb on + strand, within SMc01365 at 1415.649 kb on + strand, within SMc01365 at 1415.678 kb on - strand, within SMc01365 at 1415.685 kb on - strand, within SMc01365 at 1415.739 kb on + strand, within SMc01365 at 1415.739 kb on + strand, within SMc01365 at 1415.739 kb on + strand, within SMc01365 at 1415.783 kb on - strand, within SMc01365 at 1415.783 kb on - strand, within SMc01365 at 1415.876 kb on + strand, within SMc01365 at 1416.086 kb on + strand, within SMc01365 at 1416.086 kb on + strand, within SMc01365 at 1416.190 kb on + strand, within SMc01365 at 1416.191 kb on - strand, within SMc01365 at 1416.474 kb on + strand, within SMc01365 at 1416.475 kb on - strand, within SMc01365 at 1416.664 kb on + strand, within SMc01365 at 1416.664 kb on + strand, within SMc01365 at 1416.774 kb on - strand at 1417.265 kb on + strand at 1417.266 kb on - strand at 1417.266 kb on - strand at 1417.294 kb on - strand, within SMc01364 at 1417.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,413,698 + SMc01367 0.39 -1.5 1,413,698 + SMc01367 0.39 +0.7 1,413,713 + SMc01367 0.41 +0.1 1,413,714 - SMc01367 0.41 -0.5 1,413,716 - SMc01367 0.41 +0.4 1,413,716 - SMc01367 0.41 -0.2 1,413,786 + SMc01367 0.51 +0.1 1,413,828 + SMc01367 0.57 -0.1 1,413,961 + SMc01367 0.75 +3.1 1,413,961 + SMc01367 0.75 +0.0 1,413,961 + SMc01367 0.75 +1.2 1,413,962 - SMc01367 0.76 -0.4 1,414,310 - SMc01366 0.39 -0.2 1,414,336 + SMc01366 0.45 +0.7 1,414,336 + SMc01366 0.45 +0.1 1,414,338 + SMc01366 0.45 -1.1 1,414,338 + SMc01366 0.45 +0.4 1,414,379 - SMc01366 0.54 +0.8 1,414,379 - SMc01366 0.54 -0.3 1,414,380 + SMc01366 0.54 +0.5 1,414,781 + +0.2 1,414,781 + +0.0 1,414,782 - +0.4 1,414,863 + SMc01365 0.10 -0.8 1,414,864 - SMc01365 0.10 -0.8 1,414,889 - SMc01365 0.11 +0.6 1,414,889 - SMc01365 0.11 -1.1 1,414,892 + SMc01365 0.11 -0.3 1,414,893 - SMc01365 0.11 -1.4 1,414,893 - SMc01365 0.11 -0.2 1,414,893 - SMc01365 0.11 +1.6 1,414,895 - SMc01365 0.11 -0.1 1,414,895 - SMc01365 0.11 +0.1 1,415,026 + SMc01365 0.17 +1.2 1,415,081 - SMc01365 0.19 +0.2 1,415,112 - SMc01365 0.21 +0.1 1,415,112 - SMc01365 0.21 +0.7 1,415,202 + SMc01365 0.24 +0.1 1,415,203 - SMc01365 0.24 +0.3 1,415,233 + SMc01365 0.26 -1.0 1,415,247 + SMc01365 0.26 +0.9 1,415,298 + SMc01365 0.28 -1.5 1,415,299 - SMc01365 0.28 +0.2 1,415,442 + SMc01365 0.34 -0.4 1,415,442 + SMc01365 0.34 -0.3 1,415,443 - SMc01365 0.35 -0.4 1,415,443 - SMc01365 0.35 -1.1 1,415,644 + SMc01365 0.43 -0.1 1,415,649 + SMc01365 0.43 +0.4 1,415,649 + SMc01365 0.43 -0.4 1,415,678 - SMc01365 0.44 -0.4 1,415,685 - SMc01365 0.45 +0.5 1,415,739 + SMc01365 0.47 +0.9 1,415,739 + SMc01365 0.47 -0.0 1,415,739 + SMc01365 0.47 +0.0 1,415,783 - SMc01365 0.49 -0.1 1,415,783 - SMc01365 0.49 -1.4 1,415,876 + SMc01365 0.53 +0.8 1,416,086 + SMc01365 0.62 -0.3 1,416,086 + SMc01365 0.62 +0.0 1,416,190 + SMc01365 0.66 -0.2 1,416,191 - SMc01365 0.66 -2.7 1,416,474 + SMc01365 0.78 -0.0 1,416,475 - SMc01365 0.78 +0.0 1,416,664 + SMc01365 0.86 -0.3 1,416,664 + SMc01365 0.86 +0.2 1,416,774 - -0.4 1,417,265 + -0.8 1,417,266 - -0.5 1,417,266 - +0.1 1,417,294 - SMc01364 0.11 +0.1 1,417,294 - -0.2
Or see this region's nucleotide sequence