Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01115 and SMc01114 are separated by 4 nucleotides SMc01114 and SMc01113 are separated by 16 nucleotides SMc01113 and SMc01112 are separated by 12 nucleotides
SMc01115: SMc01115 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 439,370 to 440,788
SMc01115
SMc01114: SMc01114 - phoH-like protein, at 440,793 to 441,848
SMc01114
SMc01113: SMc01113 - hypothetical protein, at 441,865 to 442,371
SMc01113
SMc01112: SMc01112 - hypothetical protein, at 442,384 to 443,547
SMc01112
Position (kb) 440
441
442 Strain fitness (log2 ratio) -2
-1
0
1 at 439.820 kb on + strand, within SMc01115 at 439.821 kb on - strand, within SMc01115 at 439.945 kb on - strand, within SMc01115 at 439.949 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.156 kb on - strand, within SMc01115 at 440.156 kb on - strand, within SMc01115 at 440.193 kb on + strand, within SMc01115 at 440.193 kb on + strand, within SMc01115 at 440.194 kb on - strand, within SMc01115 at 440.229 kb on - strand, within SMc01115 at 440.229 kb on - strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.455 kb on + strand, within SMc01115 at 440.456 kb on - strand, within SMc01115 at 440.557 kb on - strand, within SMc01115 at 441.071 kb on + strand, within SMc01114 at 441.124 kb on + strand, within SMc01114 at 441.222 kb on + strand, within SMc01114 at 441.288 kb on + strand, within SMc01114 at 441.288 kb on + strand, within SMc01114 at 441.288 kb on + strand, within SMc01114 at 441.423 kb on + strand, within SMc01114 at 441.798 kb on + strand at 441.798 kb on + strand at 442.370 kb on - strand at 442.461 kb on + strand at 442.461 kb on + strand at 442.461 kb on + strand at 442.461 kb on + strand at 442.462 kb on - strand at 442.462 kb on - strand at 442.462 kb on - strand at 442.464 kb on + strand at 442.713 kb on + strand, within SMc01112 at 442.774 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.832 kb on - strand, within SMc01112 at 442.832 kb on - strand, within SMc01112
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 439,820 + SMc01115 0.32 -0.0 439,821 - SMc01115 0.32 -0.4 439,945 - SMc01115 0.41 -0.1 439,949 + SMc01115 0.41 +0.8 440,155 + SMc01115 0.55 -0.3 440,155 + SMc01115 0.55 +0.4 440,155 + SMc01115 0.55 +0.2 440,156 - SMc01115 0.55 -0.2 440,156 - SMc01115 0.55 -0.4 440,193 + SMc01115 0.58 -0.1 440,193 + SMc01115 0.58 +0.8 440,194 - SMc01115 0.58 +0.1 440,229 - SMc01115 0.61 -0.8 440,229 - SMc01115 0.61 -0.2 440,435 + SMc01115 0.75 -0.6 440,435 + SMc01115 0.75 -0.4 440,435 + SMc01115 0.75 -1.5 440,435 + SMc01115 0.75 +0.4 440,436 - SMc01115 0.75 +0.5 440,436 - SMc01115 0.75 +0.3 440,436 - SMc01115 0.75 +0.9 440,436 - SMc01115 0.75 -0.3 440,436 - SMc01115 0.75 +0.1 440,455 + SMc01115 0.76 +0.4 440,456 - SMc01115 0.77 -0.6 440,557 - SMc01115 0.84 -0.2 441,071 + SMc01114 0.26 -0.5 441,124 + SMc01114 0.31 -1.7 441,222 + SMc01114 0.41 -0.9 441,288 + SMc01114 0.47 -0.6 441,288 + SMc01114 0.47 -1.4 441,288 + SMc01114 0.47 -1.1 441,423 + SMc01114 0.60 -2.5 441,798 + -0.8 441,798 + -2.6 442,370 - -0.6 442,461 + +0.5 442,461 + -0.4 442,461 + +0.6 442,461 + +0.4 442,462 - -0.4 442,462 - +1.0 442,462 - +0.6 442,464 + +0.0 442,713 + SMc01112 0.28 -0.2 442,774 + SMc01112 0.34 +0.2 442,831 + SMc01112 0.38 -0.0 442,831 + SMc01112 0.38 -0.1 442,831 + SMc01112 0.38 +0.2 442,831 + SMc01112 0.38 -0.4 442,831 + SMc01112 0.38 -0.5 442,831 + SMc01112 0.38 -2.1 442,832 - SMc01112 0.38 -2.4 442,832 - SMc01112 0.38 -0.4
Or see this region's nucleotide sequence