Strain Fitness in Sinorhizobium meliloti 1021 around SMc00783

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00782 and SMc00783 overlap by 11 nucleotidesSMc00783 and SMc00784 are separated by 75 nucleotides SMc00782: SMc00782 - hypothetical protein, at 803,072 to 804,184 SMc00782 SMc00783: SMc00783 - hypothetical protein, at 804,174 to 805,226 SMc00783 SMc00784: SMc00784 - iron binding protein, at 805,302 to 806,345 SMc00784 Position (kb) 804 805 806Strain fitness (log2 ratio) -2 -1 0 1 2at 803.174 kb on + strandat 803.185 kb on - strand, within SMc00782at 803.197 kb on + strand, within SMc00782at 803.214 kb on + strand, within SMc00782at 803.215 kb on - strand, within SMc00782at 803.228 kb on + strand, within SMc00782at 803.228 kb on + strand, within SMc00782at 803.228 kb on + strand, within SMc00782at 803.229 kb on - strand, within SMc00782at 803.229 kb on - strand, within SMc00782at 803.229 kb on - strand, within SMc00782at 803.262 kb on - strand, within SMc00782at 803.303 kb on + strand, within SMc00782at 803.354 kb on + strand, within SMc00782at 803.366 kb on + strand, within SMc00782at 803.366 kb on + strand, within SMc00782at 803.433 kb on + strand, within SMc00782at 803.434 kb on - strand, within SMc00782at 803.434 kb on - strand, within SMc00782at 803.434 kb on - strand, within SMc00782at 803.483 kb on + strand, within SMc00782at 803.539 kb on + strand, within SMc00782at 803.607 kb on - strand, within SMc00782at 803.607 kb on - strand, within SMc00782at 803.613 kb on - strand, within SMc00782at 803.882 kb on + strand, within SMc00782at 803.883 kb on - strand, within SMc00782at 803.969 kb on + strand, within SMc00782at 803.969 kb on + strand, within SMc00782at 803.971 kb on + strand, within SMc00782at 803.972 kb on - strandat 804.159 kb on + strandat 804.160 kb on - strandat 804.160 kb on - strandat 804.160 kb on - strandat 804.160 kb on - strandat 804.160 kb on - strandat 804.331 kb on + strand, within SMc00783at 804.331 kb on + strand, within SMc00783at 804.331 kb on + strand, within SMc00783at 804.332 kb on - strand, within SMc00783at 804.532 kb on - strand, within SMc00783at 804.532 kb on - strand, within SMc00783at 804.735 kb on - strand, within SMc00783at 804.735 kb on - strand, within SMc00783at 804.735 kb on - strand, within SMc00783at 804.840 kb on - strand, within SMc00783at 804.840 kb on - strand, within SMc00783at 804.913 kb on - strand, within SMc00783at 804.913 kb on - strand, within SMc00783at 805.018 kb on - strand, within SMc00783at 805.018 kb on - strand, within SMc00783at 805.225 kb on - strandat 805.456 kb on + strand, within SMc00784at 805.457 kb on - strand, within SMc00784at 805.477 kb on + strand, within SMc00784at 805.478 kb on - strand, within SMc00784at 805.678 kb on + strand, within SMc00784at 805.678 kb on + strand, within SMc00784at 805.678 kb on + strand, within SMc00784at 805.678 kb on + strand, within SMc00784at 805.678 kb on + strand, within SMc00784at 805.678 kb on + strand, within SMc00784at 805.678 kb on + strand, within SMc00784at 805.678 kb on + strand, within SMc00784at 805.679 kb on - strand, within SMc00784at 805.679 kb on - strand, within SMc00784at 805.679 kb on - strand, within SMc00784at 805.679 kb on - strand, within SMc00784at 805.679 kb on - strand, within SMc00784at 805.679 kb on - strand, within SMc00784at 805.680 kb on + strand, within SMc00784at 805.681 kb on + strand, within SMc00784at 805.682 kb on - strand, within SMc00784at 805.682 kb on - strand, within SMc00784at 805.849 kb on + strand, within SMc00784at 805.849 kb on + strand, within SMc00784at 805.912 kb on + strand, within SMc00784at 805.912 kb on + strand, within SMc00784at 805.913 kb on - strand, within SMc00784at 805.913 kb on - strand, within SMc00784at 805.951 kb on + strand, within SMc00784at 805.951 kb on + strand, within SMc00784at 805.952 kb on - strand, within SMc00784at 806.106 kb on + strand, within SMc00784at 806.215 kb on - strand, within SMc00784

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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803,174 + -0.5
803,185 - SMc00782 0.10 +1.3
803,197 + SMc00782 0.11 -0.4
803,214 + SMc00782 0.13 -0.5
803,215 - SMc00782 0.13 +0.9
803,228 + SMc00782 0.14 -1.1
803,228 + SMc00782 0.14 +0.3
803,228 + SMc00782 0.14 +0.0
803,229 - SMc00782 0.14 +0.7
803,229 - SMc00782 0.14 +0.2
803,229 - SMc00782 0.14 -0.7
803,262 - SMc00782 0.17 +0.1
803,303 + SMc00782 0.21 +0.1
803,354 + SMc00782 0.25 +0.2
803,366 + SMc00782 0.26 +0.4
803,366 + SMc00782 0.26 -0.1
803,433 + SMc00782 0.32 -0.1
803,434 - SMc00782 0.33 +0.7
803,434 - SMc00782 0.33 +0.4
803,434 - SMc00782 0.33 +0.0
803,483 + SMc00782 0.37 +0.2
803,539 + SMc00782 0.42 +0.8
803,607 - SMc00782 0.48 -0.6
803,607 - SMc00782 0.48 +0.6
803,613 - SMc00782 0.49 -0.7
803,882 + SMc00782 0.73 -0.7
803,883 - SMc00782 0.73 -0.1
803,969 + SMc00782 0.81 +0.2
803,969 + SMc00782 0.81 +1.0
803,971 + SMc00782 0.81 -0.4
803,972 - -1.1
804,159 + -0.1
804,160 - -0.3
804,160 - +0.7
804,160 - -0.1
804,160 - -0.1
804,160 - -0.3
804,331 + SMc00783 0.15 -0.3
804,331 + SMc00783 0.15 -0.1
804,331 + SMc00783 0.15 -1.0
804,332 - SMc00783 0.15 -1.3
804,532 - SMc00783 0.34 -0.0
804,532 - SMc00783 0.34 +0.1
804,735 - SMc00783 0.53 -0.9
804,735 - SMc00783 0.53 -0.5
804,735 - SMc00783 0.53 +1.9
804,840 - SMc00783 0.63 -1.3
804,840 - SMc00783 0.63 -0.4
804,913 - SMc00783 0.70 -0.7
804,913 - SMc00783 0.70 +0.7
805,018 - SMc00783 0.80 +0.5
805,018 - SMc00783 0.80 -1.1
805,225 - -0.3
805,456 + SMc00784 0.15 +0.2
805,457 - SMc00784 0.15 +0.1
805,477 + SMc00784 0.17 +0.3
805,478 - SMc00784 0.17 -0.5
805,678 + SMc00784 0.36 -0.4
805,678 + SMc00784 0.36 +0.3
805,678 + SMc00784 0.36 -1.0
805,678 + SMc00784 0.36 -0.4
805,678 + SMc00784 0.36 -2.6
805,678 + SMc00784 0.36 -0.8
805,678 + SMc00784 0.36 -0.2
805,678 + SMc00784 0.36 +0.9
805,679 - SMc00784 0.36 +0.4
805,679 - SMc00784 0.36 +0.2
805,679 - SMc00784 0.36 -0.1
805,679 - SMc00784 0.36 +0.1
805,679 - SMc00784 0.36 +0.9
805,679 - SMc00784 0.36 +0.3
805,680 + SMc00784 0.36 -0.1
805,681 + SMc00784 0.36 -0.8
805,682 - SMc00784 0.36 +1.0
805,682 - SMc00784 0.36 +0.1
805,849 + SMc00784 0.52 -0.0
805,849 + SMc00784 0.52 -0.2
805,912 + SMc00784 0.58 +0.1
805,912 + SMc00784 0.58 +0.1
805,913 - SMc00784 0.59 +0.0
805,913 - SMc00784 0.59 -0.6
805,951 + SMc00784 0.62 -0.4
805,951 + SMc00784 0.62 -0.4
805,952 - SMc00784 0.62 +0.4
806,106 + SMc00784 0.77 +0.6
806,215 - SMc00784 0.87 -0.2

Or see this region's nucleotide sequence