Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00513 and SMc00512 overlap by 1 nucleotides SMc00512 and SMc00511 are separated by 62 nucleotides SMc00511 and SMc00510 overlap by 4 nucleotides
SMc00513: SMc00513 - amino acid-binding periplasmic protein, at 1,899,714 to 1,900,802
SMc00513
SMc00512: SMc00512 - hypothetical protein, at 1,900,802 to 1,901,806
SMc00512
SMc00511: SMc00511 - D-ribulose-5-phosphate 3-epimerase, at 1,901,869 to 1,902,549
SMc00511
SMc00510: SMc00510 - hypothetical protein, at 1,902,546 to 1,903,283
SMc00510
Position (kb)
1900
1901
1902 Strain fitness (log2 ratio)
-2
-1
0
1 at 1900.259 kb on + strand, within SMc00513 at 1900.261 kb on + strand, within SMc00513 at 1900.261 kb on + strand, within SMc00513 at 1900.262 kb on - strand, within SMc00513 at 1900.262 kb on - strand, within SMc00513 at 1900.284 kb on + strand, within SMc00513 at 1900.285 kb on - strand, within SMc00513 at 1900.285 kb on - strand, within SMc00513 at 1900.285 kb on - strand, within SMc00513 at 1900.420 kb on + strand, within SMc00513 at 1900.575 kb on + strand, within SMc00513 at 1900.576 kb on - strand, within SMc00513 at 1900.709 kb on + strand at 1900.793 kb on + strand at 1900.867 kb on + strand at 1900.868 kb on - strand at 1900.935 kb on + strand, within SMc00512 at 1900.936 kb on - strand, within SMc00512 at 1900.936 kb on - strand, within SMc00512 at 1901.307 kb on + strand, within SMc00512 at 1901.308 kb on - strand, within SMc00512 at 1901.308 kb on - strand, within SMc00512 at 1901.560 kb on + strand, within SMc00512 at 1901.617 kb on + strand, within SMc00512 at 1901.618 kb on - strand, within SMc00512 at 1901.749 kb on - strand at 1901.750 kb on + strand at 1901.750 kb on + strand at 1901.751 kb on - strand at 1901.751 kb on - strand at 1901.842 kb on + strand at 1901.843 kb on - strand at 1902.137 kb on + strand, within SMc00511 at 1902.138 kb on - strand, within SMc00511 at 1902.138 kb on - strand, within SMc00511 at 1902.253 kb on + strand, within SMc00511 at 1902.253 kb on + strand, within SMc00511 at 1902.253 kb on + strand, within SMc00511 at 1902.254 kb on - strand, within SMc00511 at 1902.618 kb on + strand at 1902.678 kb on + strand, within SMc00510 at 1902.678 kb on + strand, within SMc00510 at 1902.683 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.721 kb on - strand, within SMc00510 at 1902.721 kb on - strand, within SMc00510
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,900,259 + SMc00513 0.50 +0.2 1,900,261 + SMc00513 0.50 -0.0 1,900,261 + SMc00513 0.50 -1.3 1,900,262 - SMc00513 0.50 +1.0 1,900,262 - SMc00513 0.50 +1.5 1,900,284 + SMc00513 0.52 +0.3 1,900,285 - SMc00513 0.52 +0.4 1,900,285 - SMc00513 0.52 +0.2 1,900,285 - SMc00513 0.52 +0.8 1,900,420 + SMc00513 0.65 +1.2 1,900,575 + SMc00513 0.79 -0.4 1,900,576 - SMc00513 0.79 -0.1 1,900,709 + -0.1 1,900,793 + -0.2 1,900,867 + -0.1 1,900,868 - +0.0 1,900,935 + SMc00512 0.13 -0.5 1,900,936 - SMc00512 0.13 +0.2 1,900,936 - SMc00512 0.13 -0.2 1,901,307 + SMc00512 0.50 +0.1 1,901,308 - SMc00512 0.50 -0.3 1,901,308 - SMc00512 0.50 +0.4 1,901,560 + SMc00512 0.75 -0.2 1,901,617 + SMc00512 0.81 +0.7 1,901,618 - SMc00512 0.81 -0.2 1,901,749 - -0.0 1,901,750 + +0.1 1,901,750 + -0.8 1,901,751 - +1.1 1,901,751 - -0.1 1,901,842 + -0.2 1,901,843 - -2.0 1,902,137 + SMc00511 0.39 -2.2 1,902,138 - SMc00511 0.40 -2.3 1,902,138 - SMc00511 0.40 -2.6 1,902,253 + SMc00511 0.56 -2.2 1,902,253 + SMc00511 0.56 -2.2 1,902,253 + SMc00511 0.56 -2.2 1,902,254 - SMc00511 0.57 -2.7 1,902,618 + -0.4 1,902,678 + SMc00510 0.18 -0.8 1,902,678 + SMc00510 0.18 -2.2 1,902,683 + SMc00510 0.19 -1.6 1,902,720 + SMc00510 0.24 +0.6 1,902,720 + SMc00510 0.24 +0.7 1,902,720 + SMc00510 0.24 -1.6 1,902,720 + SMc00510 0.24 -2.1 1,902,721 - SMc00510 0.24 -0.5 1,902,721 - SMc00510 0.24 -0.5
Or see this region's nucleotide sequence