Strain Fitness in Sinorhizobium meliloti 1021 around SMa2251
Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | copper (II) chloride 1 mM |
|---|---|---|---|---|---|
| remove | |||||
| 1,261,029 | + | SMa2249 | 0.32 | -0.1 | |
| 1,261,073 | + | SMa2249 | 0.36 | -0.1 | |
| 1,261,124 | + | SMa2249 | 0.41 | -0.1 | |
| 1,261,238 | - | SMa2249 | 0.51 | -0.7 | |
| 1,261,238 | - | SMa2249 | 0.51 | +0.3 | |
| 1,261,414 | + | SMa2249 | 0.67 | -0.4 | |
| 1,261,547 | + | SMa2249 | 0.79 | +0.2 | |
| 1,261,548 | - | SMa2249 | 0.79 | -0.2 | |
| 1,261,548 | - | SMa2249 | 0.79 | -0.4 | |
| 1,261,548 | - | SMa2249 | 0.79 | +0.7 | |
| 1,261,638 | + | SMa2249 | 0.87 | +0.9 | |
| 1,261,639 | - | SMa2249 | 0.87 | +0.0 | |
| 1,261,924 | + | SMa2251 | 0.27 | +0.4 | |
| 1,261,925 | - | SMa2251 | 0.27 | +1.0 | |
| 1,262,000 | + | SMa2251 | 0.40 | +1.3 | |
| 1,262,021 | - | SMa2251 | 0.44 | -0.1 | |
| 1,262,097 | + | SMa2251 | 0.57 | +1.3 | |
| 1,262,130 | + | SMa2251 | 0.63 | +0.1 | |
| 1,262,130 | + | SMa2251 | 0.63 | +0.6 | |
| 1,262,130 | + | SMa2251 | 0.63 | +0.8 | |
| 1,262,174 | + | SMa2251 | 0.71 | +0.5 | |
| 1,262,252 | - | SMa2251 | 0.85 | -0.0 | |
| 1,262,335 | + | -1.7 | |||
| 1,262,972 | + | +0.2 | |||
| 1,262,972 | + | +0.9 |
Or see this region's nucleotide sequence