Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1602 and SMa1604 are separated by 83 nucleotides SMa1604 and SMa1606 overlap by 4 nucleotides
SMa1602: SMa1602 - LysR family transcriptional regulator, at 893,872 to 894,747
SMa1602
SMa1604: SMa1604 - NADH:flavin oxidoreductase / NADH oxidase, at 894,831 to 895,922
SMa1604
SMa1606: SMa1606 - hypothetical protein, at 895,919 to 896,896
SMa1606
Position (kb) 894
895
896 Strain fitness (log2 ratio) -2
-1
0
1
2 at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 894.136 kb on + strand, within SMa1602 at 894.251 kb on + strand, within SMa1602 at 894.252 kb on - strand, within SMa1602 at 894.395 kb on + strand, within SMa1602 at 894.426 kb on + strand, within SMa1602 at 894.486 kb on + strand, within SMa1602 at 894.486 kb on + strand, within SMa1602 at 894.551 kb on + strand, within SMa1602 at 894.551 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.555 kb on - strand, within SMa1602 at 894.580 kb on + strand, within SMa1602 at 894.580 kb on + strand, within SMa1602 at 894.581 kb on - strand, within SMa1602 at 894.825 kb on + strand at 894.825 kb on + strand at 894.826 kb on - strand at 894.879 kb on + strand at 894.880 kb on - strand at 894.942 kb on - strand, within SMa1604 at 894.970 kb on - strand, within SMa1604 at 894.970 kb on - strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.060 kb on - strand, within SMa1604 at 895.128 kb on + strand, within SMa1604 at 895.154 kb on + strand, within SMa1604 at 895.378 kb on - strand, within SMa1604 at 895.578 kb on + strand, within SMa1604 at 895.585 kb on - strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.643 kb on + strand, within SMa1604 at 895.855 kb on - strand at 896.108 kb on - strand, within SMa1606 at 896.229 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.503 kb on + strand, within SMa1606 at 896.503 kb on + strand, within SMa1606 at 896.504 kb on - strand, within SMa1606 at 896.509 kb on + strand, within SMa1606 at 896.549 kb on + strand, within SMa1606 at 896.550 kb on - strand, within SMa1606 at 896.680 kb on + strand, within SMa1606 at 896.795 kb on + strand, within SMa1606 at 896.796 kb on - strand, within SMa1606 at 896.796 kb on - strand, within SMa1606 at 896.843 kb on - strand at 896.901 kb on + strand at 896.902 kb on - strand at 896.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 893,855 - -0.4 893,855 - -0.3 893,855 - +0.0 893,855 - +0.6 894,136 + SMa1602 0.30 -1.9 894,251 + SMa1602 0.43 +1.3 894,252 - SMa1602 0.43 +0.4 894,395 + SMa1602 0.60 +0.1 894,426 + SMa1602 0.63 +0.3 894,486 + SMa1602 0.70 +0.4 894,486 + SMa1602 0.70 -0.6 894,551 + SMa1602 0.78 +0.7 894,551 + SMa1602 0.78 +0.9 894,554 + SMa1602 0.78 +0.5 894,554 + SMa1602 0.78 +0.2 894,554 + SMa1602 0.78 -0.4 894,555 - SMa1602 0.78 -0.6 894,580 + SMa1602 0.81 -0.4 894,580 + SMa1602 0.81 +0.6 894,581 - SMa1602 0.81 -2.4 894,825 + +0.8 894,825 + -0.1 894,826 - -0.1 894,879 + -1.6 894,880 - +0.4 894,942 - SMa1604 0.10 -0.5 894,970 - SMa1604 0.13 +0.7 894,970 - SMa1604 0.13 -0.3 895,038 + SMa1604 0.19 -1.1 895,038 + SMa1604 0.19 -1.1 895,038 + SMa1604 0.19 -0.4 895,060 - SMa1604 0.21 -0.9 895,128 + SMa1604 0.27 +0.3 895,154 + SMa1604 0.30 +0.6 895,378 - SMa1604 0.50 -0.1 895,578 + SMa1604 0.68 -0.1 895,585 - SMa1604 0.69 +0.2 895,620 + SMa1604 0.72 -0.0 895,620 + SMa1604 0.72 -0.1 895,620 + SMa1604 0.72 +1.9 895,621 - SMa1604 0.72 -1.1 895,621 - SMa1604 0.72 -0.2 895,621 - SMa1604 0.72 -1.0 895,643 + SMa1604 0.74 -0.3 895,855 - +0.7 896,108 - SMa1606 0.19 +0.1 896,229 - SMa1606 0.32 +0.5 896,412 - SMa1606 0.50 -0.6 896,412 - SMa1606 0.50 +0.1 896,412 - SMa1606 0.50 -0.0 896,415 + SMa1606 0.51 +0.9 896,415 + SMa1606 0.51 +0.4 896,415 + SMa1606 0.51 -0.1 896,503 + SMa1606 0.60 -0.5 896,503 + SMa1606 0.60 -0.2 896,504 - SMa1606 0.60 -0.9 896,509 + SMa1606 0.60 -0.1 896,549 + SMa1606 0.64 +0.7 896,550 - SMa1606 0.65 +0.7 896,680 + SMa1606 0.78 +1.9 896,795 + SMa1606 0.90 +0.7 896,796 - SMa1606 0.90 -1.0 896,796 - SMa1606 0.90 -1.0 896,843 - -0.2 896,901 + -1.8 896,902 - -1.0 896,902 - +0.3
Or see this region's nucleotide sequence