Strain Fitness in Sinorhizobium meliloti 1021 around SMa1538

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1536 and SMa1538 are separated by 6 nucleotidesSMa1538 and SMa1539 overlap by 35 nucleotidesSMa1539 and SMa1541 overlap by 37 nucleotides SMa1536: SMa1536 - NuoM2 NADH-ubiquinone/plastoquinone (complex I) oxidoreductase, at 847,358 to 848,833 SMa1536 SMa1538: SMa1538 - monovalent cation/H+ antiporter subunit D, at 848,840 to 850,600 SMa1538 SMa1539: SMa1539 - hypothetical protein, at 850,566 to 850,880 SMa1539 SMa1541: SMa1541 - monovalent cation/H+ antiporter subunit D, at 850,844 to 852,307 SMa1541 Position (kb) 848 849 850 851Strain fitness (log2 ratio) -2 -1 0 1 2at 847.930 kb on - strand, within SMa1536at 847.930 kb on - strand, within SMa1536at 848.022 kb on + strand, within SMa1536at 848.025 kb on + strand, within SMa1536at 848.025 kb on + strand, within SMa1536at 848.358 kb on + strand, within SMa1536at 848.358 kb on + strand, within SMa1536at 848.358 kb on + strand, within SMa1536at 848.359 kb on - strand, within SMa1536at 848.359 kb on - strand, within SMa1536at 848.397 kb on + strand, within SMa1536at 848.398 kb on - strand, within SMa1536at 848.398 kb on - strand, within SMa1536at 848.430 kb on + strand, within SMa1536at 848.430 kb on + strand, within SMa1536at 848.431 kb on - strand, within SMa1536at 848.431 kb on - strand, within SMa1536at 848.614 kb on - strand, within SMa1536at 848.614 kb on - strand, within SMa1536at 848.614 kb on - strand, within SMa1536at 848.614 kb on - strand, within SMa1536at 848.614 kb on - strand, within SMa1536at 848.841 kb on + strandat 848.905 kb on - strandat 848.939 kb on + strandat 849.084 kb on + strand, within SMa1538at 849.084 kb on + strand, within SMa1538at 849.138 kb on + strand, within SMa1538at 849.258 kb on + strand, within SMa1538at 849.259 kb on - strand, within SMa1538at 849.414 kb on + strand, within SMa1538at 849.415 kb on - strand, within SMa1538at 849.415 kb on - strand, within SMa1538at 849.415 kb on - strand, within SMa1538at 849.415 kb on - strand, within SMa1538at 849.415 kb on - strand, within SMa1538at 849.418 kb on - strand, within SMa1538at 849.580 kb on + strand, within SMa1538at 849.580 kb on + strand, within SMa1538at 849.581 kb on - strand, within SMa1538at 849.582 kb on + strandat 849.583 kb on - strand, within SMa1538at 849.583 kb on - strand, within SMa1538at 849.654 kb on + strand, within SMa1538at 849.693 kb on + strand, within SMa1538at 849.694 kb on - strand, within SMa1538at 849.771 kb on + strand, within SMa1538at 849.771 kb on + strand, within SMa1538at 849.771 kb on + strand, within SMa1538at 849.772 kb on - strand, within SMa1538at 849.772 kb on - strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.791 kb on - strand, within SMa1538at 849.791 kb on - strand, within SMa1538at 849.791 kb on - strand, within SMa1538at 849.795 kb on + strand, within SMa1538at 849.796 kb on - strand, within SMa1538at 849.796 kb on - strand, within SMa1538at 849.835 kb on - strand, within SMa1538at 849.835 kb on - strand, within SMa1538at 849.835 kb on - strand, within SMa1538at 849.847 kb on - strand, within SMa1538at 849.847 kb on - strand, within SMa1538at 849.912 kb on + strand, within SMa1538at 849.912 kb on + strand, within SMa1538at 849.912 kb on + strand, within SMa1538at 849.975 kb on + strand, within SMa1538at 850.044 kb on + strand, within SMa1538at 850.162 kb on - strand, within SMa1538at 850.212 kb on + strand, within SMa1538at 850.260 kb on + strand, within SMa1538at 850.261 kb on - strand, within SMa1538at 850.299 kb on + strand, within SMa1538at 850.299 kb on + strand, within SMa1538at 850.347 kb on + strand, within SMa1538at 850.347 kb on + strand, within SMa1538at 850.348 kb on - strand, within SMa1538at 850.348 kb on - strand, within SMa1538at 850.470 kb on - strandat 850.539 kb on - strandat 850.600 kb on + strandat 850.600 kb on + strandat 850.600 kb on + strandat 850.600 kb on + strandat 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.603 kb on + strand, within SMa1539at 850.604 kb on - strand, within SMa1539at 850.604 kb on - strand, within SMa1539at 850.720 kb on + strand, within SMa1539at 850.721 kb on - strand, within SMa1539at 850.781 kb on - strand, within SMa1539at 850.807 kb on + strand, within SMa1539at 850.878 kb on + strandat 850.878 kb on + strandat 850.879 kb on - strandat 850.879 kb on - strandat 851.002 kb on - strand, within SMa1541at 851.002 kb on - strand, within SMa1541at 851.020 kb on - strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.239 kb on - strand, within SMa1541at 851.239 kb on - strand, within SMa1541at 851.327 kb on + strand, within SMa1541at 851.333 kb on + strand, within SMa1541at 851.334 kb on - strand, within SMa1541at 851.334 kb on - strand, within SMa1541at 851.352 kb on + strand, within SMa1541at 851.352 kb on + strand, within SMa1541at 851.353 kb on - strand, within SMa1541at 851.353 kb on - strand, within SMa1541at 851.376 kb on + strand, within SMa1541at 851.376 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.452 kb on - strand, within SMa1541

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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847,930 - SMa1536 0.39 -1.3
847,930 - SMa1536 0.39 -1.0
848,022 + SMa1536 0.45 +0.7
848,025 + SMa1536 0.45 -0.3
848,025 + SMa1536 0.45 +0.8
848,358 + SMa1536 0.68 +0.1
848,358 + SMa1536 0.68 -0.1
848,358 + SMa1536 0.68 -0.1
848,359 - SMa1536 0.68 -1.0
848,359 - SMa1536 0.68 -1.3
848,397 + SMa1536 0.70 +1.2
848,398 - SMa1536 0.70 +0.0
848,398 - SMa1536 0.70 +0.4
848,430 + SMa1536 0.73 -0.1
848,430 + SMa1536 0.73 -0.0
848,431 - SMa1536 0.73 +0.3
848,431 - SMa1536 0.73 -1.1
848,614 - SMa1536 0.85 +0.6
848,614 - SMa1536 0.85 -0.1
848,614 - SMa1536 0.85 -0.1
848,614 - SMa1536 0.85 -1.6
848,614 - SMa1536 0.85 +0.8
848,841 + +0.6
848,905 - -0.1
848,939 + -0.0
849,084 + SMa1538 0.14 +1.2
849,084 + SMa1538 0.14 +0.2
849,138 + SMa1538 0.17 -0.1
849,258 + SMa1538 0.24 -0.2
849,259 - SMa1538 0.24 -0.8
849,414 + SMa1538 0.33 -0.7
849,415 - SMa1538 0.33 -0.1
849,415 - SMa1538 0.33 +0.1
849,415 - SMa1538 0.33 -0.8
849,415 - SMa1538 0.33 -0.1
849,415 - SMa1538 0.33 -0.0
849,418 - SMa1538 0.33 -0.1
849,580 + SMa1538 0.42 -0.7
849,580 + SMa1538 0.42 -0.1
849,581 - SMa1538 0.42 -0.5
849,582 + -0.3
849,583 - SMa1538 0.42 +0.0
849,583 - SMa1538 0.42 +0.2
849,654 + SMa1538 0.46 -0.7
849,693 + SMa1538 0.48 -0.2
849,694 - SMa1538 0.48 +0.3
849,771 + SMa1538 0.53 +0.6
849,771 + SMa1538 0.53 +0.2
849,771 + SMa1538 0.53 +2.4
849,772 - SMa1538 0.53 -0.0
849,772 - SMa1538 0.53 +0.8
849,790 + SMa1538 0.54 +0.2
849,790 + SMa1538 0.54 -2.4
849,790 + SMa1538 0.54 +0.1
849,790 + SMa1538 0.54 -1.2
849,790 + SMa1538 0.54 -0.2
849,791 - SMa1538 0.54 -0.1
849,791 - SMa1538 0.54 +0.1
849,791 - SMa1538 0.54 -0.1
849,795 + SMa1538 0.54 +0.5
849,796 - SMa1538 0.54 -0.5
849,796 - SMa1538 0.54 -0.3
849,835 - SMa1538 0.57 +0.2
849,835 - SMa1538 0.57 -0.2
849,835 - SMa1538 0.57 -0.6
849,847 - SMa1538 0.57 -0.1
849,847 - SMa1538 0.57 -0.2
849,912 + SMa1538 0.61 +0.7
849,912 + SMa1538 0.61 -0.5
849,912 + SMa1538 0.61 -0.6
849,975 + SMa1538 0.64 +0.9
850,044 + SMa1538 0.68 -2.0
850,162 - SMa1538 0.75 -0.0
850,212 + SMa1538 0.78 -1.0
850,260 + SMa1538 0.81 -0.2
850,261 - SMa1538 0.81 -0.5
850,299 + SMa1538 0.83 -0.6
850,299 + SMa1538 0.83 -0.6
850,347 + SMa1538 0.86 -0.8
850,347 + SMa1538 0.86 -0.4
850,348 - SMa1538 0.86 -1.0
850,348 - SMa1538 0.86 -0.4
850,470 - +0.8
850,539 - -0.2
850,600 + +0.1
850,600 + -1.4
850,600 + -0.2
850,600 + +1.7
850,601 - SMa1539 0.11 -1.0
850,601 - SMa1539 0.11 -0.1
850,601 - SMa1539 0.11 +0.2
850,601 - SMa1539 0.11 -0.7
850,601 - SMa1539 0.11 -0.2
850,601 - SMa1539 0.11 -0.0
850,601 - SMa1539 0.11 -0.1
850,601 - SMa1539 0.11 -1.3
850,601 - SMa1539 0.11 -0.9
850,601 - SMa1539 0.11 +0.9
850,603 + SMa1539 0.12 -0.9
850,604 - SMa1539 0.12 -0.6
850,604 - SMa1539 0.12 -1.3
850,720 + SMa1539 0.49 +0.7
850,721 - SMa1539 0.49 -0.3
850,781 - SMa1539 0.68 -0.0
850,807 + SMa1539 0.77 -0.4
850,878 + -1.6
850,878 + +0.5
850,879 - +0.2
850,879 - -0.7
851,002 - SMa1541 0.11 -0.9
851,002 - SMa1541 0.11 -0.2
851,020 - SMa1541 0.12 +0.4
851,238 + SMa1541 0.27 +1.3
851,238 + SMa1541 0.27 -0.1
851,238 + SMa1541 0.27 +0.7
851,238 + SMa1541 0.27 -0.5
851,239 - SMa1541 0.27 +0.2
851,239 - SMa1541 0.27 +1.1
851,327 + SMa1541 0.33 +0.3
851,333 + SMa1541 0.33 +0.0
851,334 - SMa1541 0.33 +0.3
851,334 - SMa1541 0.33 +0.2
851,352 + SMa1541 0.35 +0.5
851,352 + SMa1541 0.35 +1.7
851,353 - SMa1541 0.35 -0.5
851,353 - SMa1541 0.35 -0.3
851,376 + SMa1541 0.36 -0.7
851,376 + SMa1541 0.36 -0.0
851,451 + SMa1541 0.41 -1.6
851,451 + SMa1541 0.41 -0.6
851,451 + SMa1541 0.41 -0.3
851,451 + SMa1541 0.41 +0.6
851,452 - SMa1541 0.42 +0.7

Or see this region's nucleotide sequence