Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21596

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21595 and SM_b21596 are separated by 64 nucleotidesSM_b21596 and SM_b21597 are separated by 13 nucleotides SM_b21595: SM_b21595 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,135,446 to 1,136,678 _b21595 SM_b21596: SM_b21596 - hypothetical protein, at 1,136,743 to 1,137,645 _b21596 SM_b21597: SM_b21597 - exported oxidoreductase, at 1,137,659 to 1,138,690 _b21597 Position (kb) 1136 1137 1138Strain fitness (log2 ratio) -1 0 1at 1135.871 kb on + strand, within SM_b21595at 1135.871 kb on + strand, within SM_b21595at 1135.928 kb on + strand, within SM_b21595at 1135.928 kb on + strand, within SM_b21595at 1135.928 kb on + strand, within SM_b21595at 1136.126 kb on - strand, within SM_b21595at 1136.236 kb on + strand, within SM_b21595at 1136.236 kb on + strand, within SM_b21595at 1136.237 kb on - strand, within SM_b21595at 1136.240 kb on - strand, within SM_b21595at 1136.240 kb on - strand, within SM_b21595at 1136.240 kb on - strand, within SM_b21595at 1136.278 kb on + strand, within SM_b21595at 1136.320 kb on + strand, within SM_b21595at 1136.320 kb on + strand, within SM_b21595at 1136.321 kb on - strand, within SM_b21595at 1136.321 kb on - strand, within SM_b21595at 1136.592 kb on + strandat 1136.592 kb on + strandat 1136.662 kb on + strandat 1136.662 kb on + strandat 1136.666 kb on + strandat 1136.667 kb on - strandat 1136.834 kb on + strand, within SM_b21596at 1136.836 kb on + strand, within SM_b21596at 1136.836 kb on + strand, within SM_b21596at 1136.836 kb on + strand, within SM_b21596at 1136.837 kb on - strand, within SM_b21596at 1137.012 kb on + strand, within SM_b21596at 1137.029 kb on - strand, within SM_b21596at 1137.075 kb on - strand, within SM_b21596at 1137.075 kb on - strand, within SM_b21596at 1137.135 kb on - strand, within SM_b21596at 1137.275 kb on + strand, within SM_b21596at 1137.572 kb on - strandat 1137.999 kb on + strand, within SM_b21597at 1138.060 kb on - strand, within SM_b21597at 1138.093 kb on - strand, within SM_b21597at 1138.112 kb on - strand, within SM_b21597at 1138.245 kb on - strand, within SM_b21597at 1138.271 kb on + strand, within SM_b21597at 1138.272 kb on - strand, within SM_b21597at 1138.280 kb on + strand, within SM_b21597at 1138.281 kb on - strand, within SM_b21597at 1138.451 kb on + strand, within SM_b21597

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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1,135,871 + SM_b21595 0.34 -0.2
1,135,871 + SM_b21595 0.34 -0.4
1,135,928 + SM_b21595 0.39 +0.1
1,135,928 + SM_b21595 0.39 -0.7
1,135,928 + SM_b21595 0.39 +0.0
1,136,126 - SM_b21595 0.55 +0.1
1,136,236 + SM_b21595 0.64 -0.1
1,136,236 + SM_b21595 0.64 -0.4
1,136,237 - SM_b21595 0.64 +0.0
1,136,240 - SM_b21595 0.64 +0.6
1,136,240 - SM_b21595 0.64 -0.6
1,136,240 - SM_b21595 0.64 -0.4
1,136,278 + SM_b21595 0.67 +0.7
1,136,320 + SM_b21595 0.71 +0.1
1,136,320 + SM_b21595 0.71 -0.2
1,136,321 - SM_b21595 0.71 -0.5
1,136,321 - SM_b21595 0.71 +1.0
1,136,592 + -0.0
1,136,592 + +0.1
1,136,662 + +0.5
1,136,662 + -0.3
1,136,666 + +1.4
1,136,667 - -0.8
1,136,834 + SM_b21596 0.10 +0.2
1,136,836 + SM_b21596 0.10 -0.8
1,136,836 + SM_b21596 0.10 -0.4
1,136,836 + SM_b21596 0.10 +0.0
1,136,837 - SM_b21596 0.10 -0.7
1,137,012 + SM_b21596 0.30 -0.2
1,137,029 - SM_b21596 0.32 -0.4
1,137,075 - SM_b21596 0.37 -0.5
1,137,075 - SM_b21596 0.37 -1.6
1,137,135 - SM_b21596 0.43 -0.0
1,137,275 + SM_b21596 0.59 -0.2
1,137,572 - -0.3
1,137,999 + SM_b21597 0.33 -0.2
1,138,060 - SM_b21597 0.39 +0.3
1,138,093 - SM_b21597 0.42 -0.5
1,138,112 - SM_b21597 0.44 +0.2
1,138,245 - SM_b21597 0.57 +0.0
1,138,271 + SM_b21597 0.59 +0.2
1,138,272 - SM_b21597 0.59 -0.5
1,138,280 + SM_b21597 0.60 -1.5
1,138,281 - SM_b21597 0.60 -0.8
1,138,451 + SM_b21597 0.77 -0.7

Or see this region's nucleotide sequence