Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21592 and SM_b21593 overlap by 4 nucleotides SM_b21593 and SM_b21594 overlap by 4 nucleotides
SM_b21592: SM_b21592 - sugar uptake ABC transporter ATP-binding protein, at 1,132,402 to 1,133,553
_b21592
SM_b21593: SM_b21593 - sugar uptake ABC transporter permease, at 1,133,550 to 1,134,377
_b21593
SM_b21594: SM_b21594 - sugar uptake ABC transporter permease, at 1,134,374 to 1,135,276
_b21594
Position (kb)
1133
1134
1135 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1132.619 kb on - strand, within SM_b21592 at 1132.622 kb on + strand, within SM_b21592 at 1132.622 kb on + strand, within SM_b21592 at 1132.622 kb on + strand, within SM_b21592 at 1132.623 kb on - strand, within SM_b21592 at 1132.623 kb on - strand, within SM_b21592 at 1132.623 kb on - strand, within SM_b21592 at 1132.662 kb on + strand, within SM_b21592 at 1132.886 kb on + strand, within SM_b21592 at 1132.887 kb on - strand, within SM_b21592 at 1132.985 kb on + strand, within SM_b21592 at 1132.986 kb on - strand, within SM_b21592 at 1132.986 kb on - strand, within SM_b21592 at 1133.037 kb on + strand, within SM_b21592 at 1133.037 kb on + strand, within SM_b21592 at 1133.037 kb on + strand, within SM_b21592 at 1133.038 kb on - strand, within SM_b21592 at 1133.246 kb on - strand, within SM_b21592 at 1133.258 kb on + strand, within SM_b21592 at 1133.259 kb on - strand, within SM_b21592 at 1133.283 kb on + strand, within SM_b21592 at 1133.284 kb on - strand, within SM_b21592 at 1133.292 kb on - strand, within SM_b21592 at 1133.300 kb on + strand, within SM_b21592 at 1133.300 kb on + strand, within SM_b21592 at 1133.301 kb on - strand, within SM_b21592 at 1133.301 kb on - strand, within SM_b21592 at 1133.473 kb on + strand at 1133.504 kb on + strand at 1133.514 kb on - strand at 1133.629 kb on + strand at 1133.629 kb on + strand at 1133.629 kb on + strand at 1133.630 kb on - strand at 1133.630 kb on - strand at 1133.642 kb on - strand, within SM_b21593 at 1133.651 kb on + strand, within SM_b21593 at 1133.652 kb on - strand, within SM_b21593 at 1133.670 kb on - strand, within SM_b21593 at 1134.103 kb on + strand, within SM_b21593 at 1134.103 kb on + strand, within SM_b21593 at 1134.104 kb on - strand, within SM_b21593 at 1134.175 kb on + strand, within SM_b21593 at 1134.211 kb on + strand, within SM_b21593 at 1134.212 kb on - strand, within SM_b21593 at 1134.287 kb on + strand, within SM_b21593 at 1134.292 kb on + strand, within SM_b21593 at 1134.292 kb on + strand, within SM_b21593 at 1134.301 kb on + strand at 1134.302 kb on - strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.317 kb on - strand at 1134.317 kb on - strand at 1134.317 kb on - strand at 1134.408 kb on + strand at 1134.408 kb on + strand at 1134.409 kb on - strand at 1134.477 kb on + strand, within SM_b21594 at 1134.478 kb on - strand, within SM_b21594 at 1134.478 kb on - strand, within SM_b21594 at 1134.508 kb on - strand, within SM_b21594 at 1134.526 kb on + strand, within SM_b21594 at 1134.526 kb on + strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.690 kb on + strand, within SM_b21594 at 1134.690 kb on + strand, within SM_b21594 at 1134.760 kb on + strand, within SM_b21594 at 1134.760 kb on + strand, within SM_b21594 at 1134.760 kb on + strand, within SM_b21594 at 1134.998 kb on + strand, within SM_b21594 at 1134.998 kb on + strand, within SM_b21594 at 1135.088 kb on - strand, within SM_b21594 at 1135.170 kb on + strand, within SM_b21594 at 1135.170 kb on + strand, within SM_b21594 at 1135.171 kb on - strand, within SM_b21594 at 1135.171 kb on - strand, within SM_b21594 at 1135.252 kb on + strand at 1135.262 kb on + strand at 1135.263 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,132,619 - SM_b21592 0.19 +0.2 1,132,622 + SM_b21592 0.19 -0.2 1,132,622 + SM_b21592 0.19 +1.2 1,132,622 + SM_b21592 0.19 +0.3 1,132,623 - SM_b21592 0.19 -0.6 1,132,623 - SM_b21592 0.19 -0.1 1,132,623 - SM_b21592 0.19 +0.7 1,132,662 + SM_b21592 0.23 +0.1 1,132,886 + SM_b21592 0.42 +0.1 1,132,887 - SM_b21592 0.42 +0.3 1,132,985 + SM_b21592 0.51 -0.0 1,132,986 - SM_b21592 0.51 -0.1 1,132,986 - SM_b21592 0.51 -0.4 1,133,037 + SM_b21592 0.55 -0.1 1,133,037 + SM_b21592 0.55 -0.3 1,133,037 + SM_b21592 0.55 -0.2 1,133,038 - SM_b21592 0.55 +0.0 1,133,246 - SM_b21592 0.73 -0.1 1,133,258 + SM_b21592 0.74 -0.0 1,133,259 - SM_b21592 0.74 -0.9 1,133,283 + SM_b21592 0.76 -0.2 1,133,284 - SM_b21592 0.77 -0.2 1,133,292 - SM_b21592 0.77 +0.8 1,133,300 + SM_b21592 0.78 -0.0 1,133,300 + SM_b21592 0.78 +0.4 1,133,301 - SM_b21592 0.78 -0.4 1,133,301 - SM_b21592 0.78 -0.7 1,133,473 + -0.1 1,133,504 + +0.8 1,133,514 - -0.3 1,133,629 + -0.2 1,133,629 + +2.4 1,133,629 + -1.3 1,133,630 - -0.2 1,133,630 - +0.2 1,133,642 - SM_b21593 0.11 -0.8 1,133,651 + SM_b21593 0.12 -0.2 1,133,652 - SM_b21593 0.12 -0.3 1,133,670 - SM_b21593 0.14 +1.2 1,134,103 + SM_b21593 0.67 +0.1 1,134,103 + SM_b21593 0.67 +0.2 1,134,104 - SM_b21593 0.67 +0.6 1,134,175 + SM_b21593 0.75 -0.1 1,134,211 + SM_b21593 0.80 -0.3 1,134,212 - SM_b21593 0.80 +1.6 1,134,287 + SM_b21593 0.89 -0.3 1,134,292 + SM_b21593 0.90 -0.2 1,134,292 + SM_b21593 0.90 +0.1 1,134,301 + -0.5 1,134,302 - +0.7 1,134,316 + -0.2 1,134,316 + +0.9 1,134,316 + -0.1 1,134,316 + +0.9 1,134,317 - +0.1 1,134,317 - -0.6 1,134,317 - +0.4 1,134,408 + -0.6 1,134,408 + -0.0 1,134,409 - -0.7 1,134,477 + SM_b21594 0.11 +0.3 1,134,478 - SM_b21594 0.12 -0.0 1,134,478 - SM_b21594 0.12 -0.3 1,134,508 - SM_b21594 0.15 +0.8 1,134,526 + SM_b21594 0.17 -0.1 1,134,526 + SM_b21594 0.17 -0.3 1,134,527 - SM_b21594 0.17 -0.8 1,134,527 - SM_b21594 0.17 -0.2 1,134,527 - SM_b21594 0.17 +0.8 1,134,690 + SM_b21594 0.35 +0.1 1,134,690 + SM_b21594 0.35 -0.8 1,134,760 + SM_b21594 0.43 +0.3 1,134,760 + SM_b21594 0.43 -0.4 1,134,760 + SM_b21594 0.43 +0.2 1,134,998 + SM_b21594 0.69 -0.5 1,134,998 + SM_b21594 0.69 -0.2 1,135,088 - SM_b21594 0.79 -2.2 1,135,170 + SM_b21594 0.88 +0.1 1,135,170 + SM_b21594 0.88 +0.3 1,135,171 - SM_b21594 0.88 -0.1 1,135,171 - SM_b21594 0.88 -0.5 1,135,252 + +0.0 1,135,262 + -0.2 1,135,263 - -0.1
Or see this region's nucleotide sequence