Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21381 and SM_b21382 are separated by 12 nucleotides SM_b21382 and SM_b21383 are separated by 236 nucleotides SM_b21383 and SM_b21384 are separated by 103 nucleotides
SM_b21381: SM_b21381 - hypothetical protein, at 1,045,260 to 1,045,598
_b21381
SM_b21382: SM_b21382 - hypothetical protein, at 1,045,611 to 1,046,132
_b21382
SM_b21383: SM_b21383 - SDR family dehydrogenase, at 1,046,369 to 1,047,259
_b21383
SM_b21384: SM_b21384 - SDR family dehydrogenase, at 1,047,363 to 1,048,106
_b21384
Position (kb)
1046
1047
1048 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1045.544 kb on + strand, within SM_b21381 at 1045.545 kb on - strand, within SM_b21381 at 1045.545 kb on - strand, within SM_b21381 at 1045.628 kb on + strand at 1045.629 kb on - strand at 1045.629 kb on - strand at 1045.629 kb on - strand at 1045.629 kb on - strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.647 kb on - strand at 1045.774 kb on + strand, within SM_b21382 at 1045.774 kb on + strand, within SM_b21382 at 1045.774 kb on + strand, within SM_b21382 at 1045.775 kb on - strand, within SM_b21382 at 1045.775 kb on - strand, within SM_b21382 at 1045.923 kb on - strand, within SM_b21382 at 1045.949 kb on - strand, within SM_b21382 at 1045.996 kb on + strand, within SM_b21382 at 1046.149 kb on + strand at 1046.325 kb on + strand at 1046.326 kb on - strand at 1046.326 kb on - strand at 1046.326 kb on - strand at 1046.326 kb on - strand at 1046.370 kb on + strand at 1046.370 kb on + strand at 1046.370 kb on + strand at 1046.392 kb on - strand at 1046.392 kb on - strand at 1046.393 kb on + strand at 1046.393 kb on + strand at 1046.394 kb on - strand at 1046.620 kb on - strand, within SM_b21383 at 1046.650 kb on - strand, within SM_b21383 at 1046.659 kb on - strand, within SM_b21383 at 1046.681 kb on - strand, within SM_b21383 at 1046.703 kb on - strand, within SM_b21383 at 1046.936 kb on - strand, within SM_b21383 at 1047.005 kb on + strand, within SM_b21383 at 1047.032 kb on + strand, within SM_b21383 at 1047.033 kb on - strand, within SM_b21383 at 1047.033 kb on - strand, within SM_b21383 at 1047.056 kb on + strand, within SM_b21383 at 1047.056 kb on + strand, within SM_b21383 at 1047.057 kb on - strand, within SM_b21383 at 1047.057 kb on - strand, within SM_b21383 at 1047.227 kb on - strand at 1047.515 kb on + strand, within SM_b21384 at 1047.516 kb on - strand, within SM_b21384 at 1047.516 kb on - strand, within SM_b21384 at 1047.516 kb on - strand, within SM_b21384 at 1047.517 kb on + strand, within SM_b21384 at 1047.518 kb on - strand, within SM_b21384 at 1047.518 kb on - strand, within SM_b21384 at 1047.530 kb on + strand, within SM_b21384 at 1047.625 kb on + strand, within SM_b21384 at 1047.625 kb on + strand, within SM_b21384 at 1047.625 kb on + strand, within SM_b21384 at 1047.625 kb on + strand, within SM_b21384 at 1047.626 kb on - strand, within SM_b21384 at 1047.655 kb on + strand, within SM_b21384 at 1047.674 kb on + strand, within SM_b21384 at 1047.674 kb on + strand, within SM_b21384 at 1047.675 kb on - strand, within SM_b21384 at 1047.779 kb on + strand, within SM_b21384 at 1047.854 kb on + strand, within SM_b21384 at 1047.855 kb on - strand, within SM_b21384 at 1047.855 kb on - strand, within SM_b21384 at 1047.864 kb on + strand, within SM_b21384 at 1047.950 kb on - strand, within SM_b21384 at 1047.950 kb on - strand, within SM_b21384 at 1048.006 kb on - strand, within SM_b21384 at 1048.127 kb on - strand at 1048.151 kb on + strand at 1048.151 kb on + strand at 1048.152 kb on - strand at 1048.152 kb on - strand at 1048.152 kb on - strand at 1048.152 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,045,544 + SM_b21381 0.84 +0.5 1,045,545 - SM_b21381 0.84 -0.1 1,045,545 - SM_b21381 0.84 +0.7 1,045,628 + +0.2 1,045,629 - +0.9 1,045,629 - -0.8 1,045,629 - -0.7 1,045,629 - -1.1 1,045,630 + +0.1 1,045,630 + -2.0 1,045,630 + +0.1 1,045,630 + -0.4 1,045,630 + +0.3 1,045,630 + -0.2 1,045,630 + -0.2 1,045,631 - -1.1 1,045,631 - +1.0 1,045,631 - -0.3 1,045,631 - -0.2 1,045,631 - -0.1 1,045,631 - +0.1 1,045,631 - +1.1 1,045,647 - +0.8 1,045,774 + SM_b21382 0.31 -0.2 1,045,774 + SM_b21382 0.31 -0.0 1,045,774 + SM_b21382 0.31 +0.3 1,045,775 - SM_b21382 0.31 -0.1 1,045,775 - SM_b21382 0.31 -0.7 1,045,923 - SM_b21382 0.60 +0.1 1,045,949 - SM_b21382 0.65 +1.3 1,045,996 + SM_b21382 0.74 -0.2 1,046,149 + +0.1 1,046,325 + +0.4 1,046,326 - +0.4 1,046,326 - -0.6 1,046,326 - -0.6 1,046,326 - -0.6 1,046,370 + +0.0 1,046,370 + -0.0 1,046,370 + +1.2 1,046,392 - -0.1 1,046,392 - -0.2 1,046,393 + +0.6 1,046,393 + -1.0 1,046,394 - -0.1 1,046,620 - SM_b21383 0.28 -1.4 1,046,650 - SM_b21383 0.32 -0.8 1,046,659 - SM_b21383 0.33 +0.2 1,046,681 - SM_b21383 0.35 -0.3 1,046,703 - SM_b21383 0.37 -0.3 1,046,936 - SM_b21383 0.64 +1.0 1,047,005 + SM_b21383 0.71 -0.2 1,047,032 + SM_b21383 0.74 -0.1 1,047,033 - SM_b21383 0.75 -0.8 1,047,033 - SM_b21383 0.75 -0.3 1,047,056 + SM_b21383 0.77 -0.5 1,047,056 + SM_b21383 0.77 -3.0 1,047,057 - SM_b21383 0.77 +0.0 1,047,057 - SM_b21383 0.77 -0.6 1,047,227 - +0.9 1,047,515 + SM_b21384 0.20 -0.2 1,047,516 - SM_b21384 0.21 -1.7 1,047,516 - SM_b21384 0.21 +0.1 1,047,516 - SM_b21384 0.21 -0.9 1,047,517 + SM_b21384 0.21 +0.3 1,047,518 - SM_b21384 0.21 -0.2 1,047,518 - SM_b21384 0.21 -0.8 1,047,530 + SM_b21384 0.22 -0.0 1,047,625 + SM_b21384 0.35 -0.1 1,047,625 + SM_b21384 0.35 -0.4 1,047,625 + SM_b21384 0.35 +0.5 1,047,625 + SM_b21384 0.35 -0.0 1,047,626 - SM_b21384 0.35 +0.1 1,047,655 + SM_b21384 0.39 +0.3 1,047,674 + SM_b21384 0.42 +0.1 1,047,674 + SM_b21384 0.42 -0.4 1,047,675 - SM_b21384 0.42 -1.0 1,047,779 + SM_b21384 0.56 -1.0 1,047,854 + SM_b21384 0.66 +0.1 1,047,855 - SM_b21384 0.66 +0.5 1,047,855 - SM_b21384 0.66 -0.4 1,047,864 + SM_b21384 0.67 -0.1 1,047,950 - SM_b21384 0.79 -0.2 1,047,950 - SM_b21384 0.79 +1.6 1,048,006 - SM_b21384 0.86 +0.5 1,048,127 - -0.3 1,048,151 + -0.1 1,048,151 + +1.3 1,048,152 - -0.4 1,048,152 - -0.3 1,048,152 - +0.5 1,048,152 - -0.4
Or see this region's nucleotide sequence