Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21229

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21228 and SM_b21229 are separated by 85 nucleotidesSM_b21229 and SM_b21230 are separated by 263 nucleotides SM_b21228: SM_b21228 - nucleotide sugar epimerase dehydratase, at 792,055 to 792,990 _b21228 SM_b21229: SM_b21229 - calcium-binding exported protein, at 793,076 to 794,239 _b21229 SM_b21230: SM_b21230 - glycosyltransferase, at 794,503 to 795,585 _b21230 Position (kb) 793 794 795Strain fitness (log2 ratio) -2 -1 0 1 2at 792.127 kb on + strandat 792.128 kb on - strandat 792.266 kb on - strand, within SM_b21228at 792.404 kb on - strand, within SM_b21228at 792.404 kb on - strand, within SM_b21228at 792.404 kb on - strand, within SM_b21228at 792.466 kb on + strand, within SM_b21228at 792.467 kb on - strand, within SM_b21228at 792.467 kb on - strand, within SM_b21228at 792.467 kb on - strand, within SM_b21228at 792.470 kb on - strand, within SM_b21228at 792.562 kb on + strand, within SM_b21228at 792.563 kb on - strand, within SM_b21228at 792.563 kb on - strand, within SM_b21228at 792.563 kb on - strand, within SM_b21228at 792.563 kb on - strand, within SM_b21228at 792.563 kb on - strand, within SM_b21228at 792.655 kb on + strand, within SM_b21228at 792.655 kb on + strand, within SM_b21228at 792.668 kb on + strand, within SM_b21228at 792.668 kb on + strand, within SM_b21228at 792.673 kb on + strand, within SM_b21228at 792.674 kb on - strand, within SM_b21228at 792.731 kb on + strand, within SM_b21228at 792.901 kb on + strandat 792.988 kb on + strandat 792.988 kb on + strandat 792.988 kb on + strandat 792.989 kb on - strandat 793.039 kb on + strandat 793.181 kb on + strandat 793.209 kb on + strand, within SM_b21229at 793.215 kb on + strand, within SM_b21229at 793.215 kb on + strand, within SM_b21229at 793.245 kb on + strand, within SM_b21229at 793.246 kb on - strand, within SM_b21229at 793.252 kb on + strand, within SM_b21229at 793.253 kb on - strand, within SM_b21229at 793.268 kb on + strand, within SM_b21229at 793.268 kb on + strand, within SM_b21229at 793.300 kb on - strand, within SM_b21229at 793.374 kb on - strand, within SM_b21229at 793.464 kb on + strand, within SM_b21229at 793.464 kb on + strand, within SM_b21229at 793.464 kb on + strand, within SM_b21229at 793.465 kb on - strand, within SM_b21229at 793.465 kb on - strand, within SM_b21229at 793.465 kb on - strand, within SM_b21229at 793.648 kb on - strand, within SM_b21229at 793.749 kb on + strand, within SM_b21229at 793.749 kb on + strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.751 kb on + strand, within SM_b21229at 793.751 kb on + strand, within SM_b21229at 793.752 kb on - strand, within SM_b21229at 793.752 kb on - strand, within SM_b21229at 793.814 kb on + strand, within SM_b21229at 793.851 kb on + strand, within SM_b21229at 793.882 kb on + strand, within SM_b21229at 793.882 kb on + strand, within SM_b21229at 793.883 kb on - strand, within SM_b21229at 793.883 kb on - strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.885 kb on - strand, within SM_b21229at 793.885 kb on - strand, within SM_b21229at 793.988 kb on + strand, within SM_b21229at 793.988 kb on + strand, within SM_b21229at 793.988 kb on + strand, within SM_b21229at 794.073 kb on + strand, within SM_b21229at 794.074 kb on - strand, within SM_b21229at 794.170 kb on - strandat 794.253 kb on - strandat 794.309 kb on + strandat 794.363 kb on + strandat 794.405 kb on + strandat 794.406 kb on - strandat 794.597 kb on + strandat 794.598 kb on - strandat 794.666 kb on - strand, within SM_b21230at 794.810 kb on + strand, within SM_b21230at 794.810 kb on + strand, within SM_b21230at 794.811 kb on - strand, within SM_b21230at 795.016 kb on + strand, within SM_b21230at 795.111 kb on - strand, within SM_b21230at 795.116 kb on + strand, within SM_b21230at 795.117 kb on - strand, within SM_b21230at 795.152 kb on + strand, within SM_b21230at 795.153 kb on - strand, within SM_b21230at 795.157 kb on + strand, within SM_b21230at 795.158 kb on - strand, within SM_b21230at 795.179 kb on - strand, within SM_b21230at 795.220 kb on - strand, within SM_b21230at 795.220 kb on - strand, within SM_b21230

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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792,127 + -0.0
792,128 - -0.1
792,266 - SM_b21228 0.23 -0.1
792,404 - SM_b21228 0.37 -1.2
792,404 - SM_b21228 0.37 +0.8
792,404 - SM_b21228 0.37 -0.1
792,466 + SM_b21228 0.44 +0.1
792,467 - SM_b21228 0.44 -0.1
792,467 - SM_b21228 0.44 -0.1
792,467 - SM_b21228 0.44 -0.2
792,470 - SM_b21228 0.44 -0.1
792,562 + SM_b21228 0.54 -0.1
792,563 - SM_b21228 0.54 -0.3
792,563 - SM_b21228 0.54 -0.2
792,563 - SM_b21228 0.54 -0.2
792,563 - SM_b21228 0.54 -0.1
792,563 - SM_b21228 0.54 -1.2
792,655 + SM_b21228 0.64 +0.4
792,655 + SM_b21228 0.64 -1.0
792,668 + SM_b21228 0.65 -0.4
792,668 + SM_b21228 0.65 -0.6
792,673 + SM_b21228 0.66 +0.4
792,674 - SM_b21228 0.66 -0.6
792,731 + SM_b21228 0.72 -0.1
792,901 + -0.3
792,988 + -0.9
792,988 + -0.1
792,988 + +0.1
792,989 - +0.7
793,039 + +0.3
793,181 + -0.5
793,209 + SM_b21229 0.11 -0.2
793,215 + SM_b21229 0.12 -1.2
793,215 + SM_b21229 0.12 -0.1
793,245 + SM_b21229 0.15 +1.8
793,246 - SM_b21229 0.15 +0.1
793,252 + SM_b21229 0.15 -0.8
793,253 - SM_b21229 0.15 -0.8
793,268 + SM_b21229 0.16 -1.0
793,268 + SM_b21229 0.16 +0.1
793,300 - SM_b21229 0.19 +0.2
793,374 - SM_b21229 0.26 -0.8
793,464 + SM_b21229 0.33 +0.1
793,464 + SM_b21229 0.33 -0.4
793,464 + SM_b21229 0.33 -0.4
793,465 - SM_b21229 0.33 +0.4
793,465 - SM_b21229 0.33 +0.7
793,465 - SM_b21229 0.33 -0.7
793,648 - SM_b21229 0.49 -0.5
793,749 + SM_b21229 0.58 -0.2
793,749 + SM_b21229 0.58 -0.1
793,750 - SM_b21229 0.58 -0.0
793,750 - SM_b21229 0.58 +0.8
793,750 - SM_b21229 0.58 -2.1
793,750 - SM_b21229 0.58 +0.3
793,751 + SM_b21229 0.58 -1.2
793,751 + SM_b21229 0.58 +0.1
793,752 - SM_b21229 0.58 -0.3
793,752 - SM_b21229 0.58 +0.0
793,814 + SM_b21229 0.63 -0.8
793,851 + SM_b21229 0.67 -0.3
793,882 + SM_b21229 0.69 -0.2
793,882 + SM_b21229 0.69 -0.5
793,883 - SM_b21229 0.69 -0.7
793,883 - SM_b21229 0.69 +0.1
793,884 + SM_b21229 0.69 +0.3
793,884 + SM_b21229 0.69 -1.7
793,884 + SM_b21229 0.69 -0.3
793,884 + SM_b21229 0.69 +0.2
793,885 - SM_b21229 0.70 +0.0
793,885 - SM_b21229 0.70 -0.1
793,988 + SM_b21229 0.78 -0.3
793,988 + SM_b21229 0.78 -0.6
793,988 + SM_b21229 0.78 +0.4
794,073 + SM_b21229 0.86 +0.3
794,074 - SM_b21229 0.86 -0.3
794,170 - +0.2
794,253 - -1.4
794,309 + +1.8
794,363 + -0.2
794,405 + -1.4
794,406 - +0.2
794,597 + -0.1
794,598 - -0.7
794,666 - SM_b21230 0.15 +0.5
794,810 + SM_b21230 0.28 -0.4
794,810 + SM_b21230 0.28 -0.2
794,811 - SM_b21230 0.28 -0.4
795,016 + SM_b21230 0.47 -0.5
795,111 - SM_b21230 0.56 +0.5
795,116 + SM_b21230 0.57 +0.2
795,117 - SM_b21230 0.57 +2.6
795,152 + SM_b21230 0.60 +0.5
795,153 - SM_b21230 0.60 -0.7
795,157 + SM_b21230 0.60 -0.3
795,158 - SM_b21230 0.60 -0.2
795,179 - SM_b21230 0.62 +0.2
795,220 - SM_b21230 0.66 -0.6
795,220 - SM_b21230 0.66 -0.7

Or see this region's nucleotide sequence