Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21150

Experiment: copper (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21148 and SM_b21149 are separated by 12 nucleotidesSM_b21149 and SM_b21150 overlap by 4 nucleotidesSM_b21150 and SM_b21151 are separated by 29 nucleotides SM_b21148: SM_b21148 - oxidoreductase, at 892,614 to 893,774 _b21148 SM_b21149: SM_b21149 - sugar uptake ABC transporter permease, at 893,787 to 894,671 _b21149 SM_b21150: SM_b21150 - sugar uptake ABC transporter permease, at 894,668 to 895,525 _b21150 SM_b21151: SM_b21151 - substrate-binding protein of a sugar uptake ABC transporter system, at 895,555 to 896,784 _b21151 Position (kb) 894 895 896Strain fitness (log2 ratio) -2 -1 0 1at 893.848 kb on - strandat 893.882 kb on + strand, within SM_b21149at 893.949 kb on + strand, within SM_b21149at 894.159 kb on + strand, within SM_b21149at 894.160 kb on - strand, within SM_b21149at 894.160 kb on - strand, within SM_b21149at 894.160 kb on - strand, within SM_b21149at 894.162 kb on - strand, within SM_b21149at 894.306 kb on + strand, within SM_b21149at 894.307 kb on - strand, within SM_b21149at 894.307 kb on - strand, within SM_b21149at 894.307 kb on - strand, within SM_b21149at 894.345 kb on + strand, within SM_b21149at 894.346 kb on - strand, within SM_b21149at 894.381 kb on + strand, within SM_b21149at 894.382 kb on - strand, within SM_b21149at 894.538 kb on - strand, within SM_b21149at 894.538 kb on - strand, within SM_b21149at 894.599 kb on + strandat 894.627 kb on + strandat 894.627 kb on + strandat 894.704 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.783 kb on + strand, within SM_b21150at 894.783 kb on + strand, within SM_b21150at 894.783 kb on + strand, within SM_b21150at 894.858 kb on - strand, within SM_b21150at 894.858 kb on - strand, within SM_b21150at 894.898 kb on + strand, within SM_b21150at 894.899 kb on - strand, within SM_b21150at 894.968 kb on + strand, within SM_b21150at 894.968 kb on + strand, within SM_b21150at 894.969 kb on - strand, within SM_b21150at 895.104 kb on - strand, within SM_b21150at 895.169 kb on + strand, within SM_b21150at 895.169 kb on + strand, within SM_b21150at 895.170 kb on - strand, within SM_b21150at 895.232 kb on + strand, within SM_b21150at 895.239 kb on + strand, within SM_b21150at 895.240 kb on - strand, within SM_b21150at 895.281 kb on + strand, within SM_b21150at 895.281 kb on + strand, within SM_b21150at 895.310 kb on + strandat 895.311 kb on - strand, within SM_b21150at 895.358 kb on + strand, within SM_b21150at 895.358 kb on + strand, within SM_b21150at 895.359 kb on - strand, within SM_b21150at 895.389 kb on - strand, within SM_b21150at 895.485 kb on - strandat 895.524 kb on - strandat 895.534 kb on + strandat 895.560 kb on + strandat 895.561 kb on - strandat 895.561 kb on - strandat 895.561 kb on - strandat 895.576 kb on - strandat 895.660 kb on + strandat 895.684 kb on - strand, within SM_b21151at 895.696 kb on + strand, within SM_b21151at 895.696 kb on + strand, within SM_b21151at 895.696 kb on + strand, within SM_b21151at 895.696 kb on + strand, within SM_b21151at 895.820 kb on - strand, within SM_b21151at 895.906 kb on + strand, within SM_b21151at 895.907 kb on - strand, within SM_b21151at 895.914 kb on + strand, within SM_b21151at 895.914 kb on + strand, within SM_b21151at 895.960 kb on - strand, within SM_b21151at 895.985 kb on - strand, within SM_b21151at 896.158 kb on + strand, within SM_b21151at 896.160 kb on + strand, within SM_b21151at 896.161 kb on - strand, within SM_b21151at 896.161 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.236 kb on + strand, within SM_b21151at 896.236 kb on + strand, within SM_b21151at 896.236 kb on + strand, within SM_b21151at 896.278 kb on + strand, within SM_b21151at 896.278 kb on + strand, within SM_b21151at 896.388 kb on - strand, within SM_b21151

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
remove
893,848 - +1.2
893,882 + SM_b21149 0.11 +1.6
893,949 + SM_b21149 0.18 +0.5
894,159 + SM_b21149 0.42 -0.5
894,160 - SM_b21149 0.42 +0.6
894,160 - SM_b21149 0.42 +0.4
894,160 - SM_b21149 0.42 -0.0
894,162 - SM_b21149 0.42 +0.0
894,306 + SM_b21149 0.59 +0.1
894,307 - SM_b21149 0.59 +0.1
894,307 - SM_b21149 0.59 -0.8
894,307 - SM_b21149 0.59 +0.7
894,345 + SM_b21149 0.63 +1.3
894,346 - SM_b21149 0.63 +1.5
894,381 + SM_b21149 0.67 -0.3
894,382 - SM_b21149 0.67 +0.2
894,538 - SM_b21149 0.85 -0.4
894,538 - SM_b21149 0.85 -0.9
894,599 + -0.2
894,627 + -0.4
894,627 + -2.3
894,704 + -0.1
894,722 + +0.1
894,722 + +0.3
894,722 + +0.2
894,722 + +0.5
894,722 + -0.7
894,783 + SM_b21150 0.13 -0.0
894,783 + SM_b21150 0.13 +0.0
894,783 + SM_b21150 0.13 +0.6
894,858 - SM_b21150 0.22 -0.1
894,858 - SM_b21150 0.22 -0.8
894,898 + SM_b21150 0.27 +0.5
894,899 - SM_b21150 0.27 -0.3
894,968 + SM_b21150 0.35 -0.1
894,968 + SM_b21150 0.35 -0.3
894,969 - SM_b21150 0.35 -1.3
895,104 - SM_b21150 0.51 +0.1
895,169 + SM_b21150 0.58 +0.2
895,169 + SM_b21150 0.58 +0.1
895,170 - SM_b21150 0.59 +0.1
895,232 + SM_b21150 0.66 +0.2
895,239 + SM_b21150 0.67 +0.2
895,240 - SM_b21150 0.67 -0.9
895,281 + SM_b21150 0.71 -0.1
895,281 + SM_b21150 0.71 -0.8
895,310 + -0.4
895,311 - SM_b21150 0.75 -1.5
895,358 + SM_b21150 0.80 -0.7
895,358 + SM_b21150 0.80 -0.9
895,359 - SM_b21150 0.81 -0.5
895,389 - SM_b21150 0.84 -0.5
895,485 - -0.2
895,524 - +0.3
895,534 + -0.4
895,560 + -0.2
895,561 - +0.0
895,561 - -0.4
895,561 - +0.0
895,576 - +0.6
895,660 + -0.8
895,684 - SM_b21151 0.10 +0.1
895,696 + SM_b21151 0.11 +0.2
895,696 + SM_b21151 0.11 +0.1
895,696 + SM_b21151 0.11 +0.1
895,696 + SM_b21151 0.11 -0.4
895,820 - SM_b21151 0.22 +1.1
895,906 + SM_b21151 0.29 +0.1
895,907 - SM_b21151 0.29 +0.9
895,914 + SM_b21151 0.29 +0.8
895,914 + SM_b21151 0.29 -0.2
895,960 - SM_b21151 0.33 -0.6
895,985 - SM_b21151 0.35 +1.0
896,158 + SM_b21151 0.49 -0.3
896,160 + SM_b21151 0.49 -0.0
896,161 - SM_b21151 0.49 -0.1
896,161 - SM_b21151 0.49 -0.3
896,194 - SM_b21151 0.52 -0.9
896,194 - SM_b21151 0.52 -0.2
896,194 - SM_b21151 0.52 +0.1
896,194 - SM_b21151 0.52 +0.2
896,236 + SM_b21151 0.55 +0.2
896,236 + SM_b21151 0.55 -1.4
896,236 + SM_b21151 0.55 -0.4
896,278 + SM_b21151 0.59 -2.4
896,278 + SM_b21151 0.59 +0.6
896,388 - SM_b21151 0.68 +0.2

Or see this region's nucleotide sequence