Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21038 and SM_b21039 are separated by 13 nucleotides SM_b21039 and SM_b21040 overlap by 4 nucleotides SM_b21040 and SM_b21041 are separated by 87 nucleotides
SM_b21038: SM_b21038 - oligopeptidemurein peptide ABC transporter permease, at 656,250 to 657,227
_b21038
SM_b21039: SM_b21039 - oligopeptidemurein peptide ABC transporter permease, at 657,241 to 658,116
_b21039
SM_b21040: SM_b21040 - oligopeptidemurein peptide ABC transporter ATP-binding protein, at 658,113 to 659,786
_b21040
SM_b21041: SM_b21041 - hypothetical protein, at 659,874 to 661,109
_b21041
Position (kb)
658
659
660 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 657.189 kb on + strand at 657.190 kb on - strand at 657.190 kb on - strand at 657.322 kb on + strand at 657.322 kb on + strand at 657.323 kb on - strand at 657.323 kb on - strand at 657.389 kb on - strand, within SM_b21039 at 657.417 kb on + strand, within SM_b21039 at 657.417 kb on + strand, within SM_b21039 at 657.436 kb on + strand, within SM_b21039 at 657.437 kb on - strand, within SM_b21039 at 657.443 kb on - strand, within SM_b21039 at 657.494 kb on - strand, within SM_b21039 at 657.690 kb on - strand, within SM_b21039 at 657.733 kb on + strand, within SM_b21039 at 657.733 kb on + strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.781 kb on + strand, within SM_b21039 at 657.782 kb on - strand, within SM_b21039 at 657.875 kb on + strand, within SM_b21039 at 657.988 kb on + strand, within SM_b21039 at 657.988 kb on + strand, within SM_b21039 at 658.006 kb on + strand, within SM_b21039 at 658.724 kb on - strand, within SM_b21040 at 658.724 kb on - strand, within SM_b21040 at 658.882 kb on - strand, within SM_b21040 at 658.978 kb on + strand, within SM_b21040 at 658.979 kb on - strand, within SM_b21040 at 659.484 kb on - strand, within SM_b21040 at 659.667 kb on + strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.740 kb on - strand at 659.780 kb on - strand at 659.854 kb on - strand at 659.854 kb on - strand at 660.315 kb on + strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.442 kb on - strand, within SM_b21041 at 660.463 kb on - strand, within SM_b21041 at 660.642 kb on + strand, within SM_b21041 at 660.780 kb on + strand, within SM_b21041
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 657,189 + +1.8 657,190 - -0.8 657,190 - +0.2 657,322 + -0.0 657,322 + -0.4 657,323 - +0.4 657,323 - -0.4 657,389 - SM_b21039 0.17 +0.2 657,417 + SM_b21039 0.20 -0.1 657,417 + SM_b21039 0.20 -0.1 657,436 + SM_b21039 0.22 -0.7 657,437 - SM_b21039 0.22 +1.1 657,443 - SM_b21039 0.23 -0.0 657,494 - SM_b21039 0.29 -0.4 657,690 - SM_b21039 0.51 +0.2 657,733 + SM_b21039 0.56 -0.6 657,733 + SM_b21039 0.56 -0.2 657,734 - SM_b21039 0.56 +0.4 657,734 - SM_b21039 0.56 +0.3 657,734 - SM_b21039 0.56 -0.4 657,781 + SM_b21039 0.62 +0.6 657,782 - SM_b21039 0.62 +0.4 657,875 + SM_b21039 0.72 -0.7 657,988 + SM_b21039 0.85 +1.2 657,988 + SM_b21039 0.85 -1.5 658,006 + SM_b21039 0.87 -0.2 658,724 - SM_b21040 0.36 -0.9 658,724 - SM_b21040 0.36 -0.0 658,882 - SM_b21040 0.46 -1.9 658,978 + SM_b21040 0.52 -0.4 658,979 - SM_b21040 0.52 -2.6 659,484 - SM_b21040 0.82 -0.6 659,667 + +0.0 659,668 - -0.2 659,668 - -0.8 659,668 - +2.2 659,668 - +0.3 659,740 - -0.9 659,780 - -2.1 659,854 - -1.2 659,854 - -0.2 660,315 + SM_b21041 0.36 -0.6 660,316 - SM_b21041 0.36 +0.2 660,316 - SM_b21041 0.36 +0.2 660,316 - SM_b21041 0.36 +0.2 660,416 + SM_b21041 0.44 +0.5 660,416 + SM_b21041 0.44 +1.2 660,442 - SM_b21041 0.46 -0.6 660,463 - SM_b21041 0.48 -0.0 660,642 + SM_b21041 0.62 +0.5 660,780 + SM_b21041 0.73 -0.7
Or see this region's nucleotide sequence