Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20702 and SM_b20703 are separated by 51 nucleotides SM_b20703 and SM_b20704 are separated by 276 nucleotides SM_b20704 and SM_b20705 are separated by 314 nucleotides
SM_b20702: SM_b20702 - regulatory protein, at 1,502,959 to 1,504,623
_b20702
SM_b20703: SM_b20703 - hypothetical protein, at 1,504,675 to 1,505,184
_b20703
SM_b20704: SM_b20704 - glycogen synthase, at 1,505,461 to 1,506,921
_b20704
SM_b20705: SM_b20705 - hypothetical protein, at 1,507,236 to 1,508,147
_b20705
Position (kb)
1505
1506
1507 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1504.645 kb on + strand at 1504.676 kb on + strand at 1504.676 kb on + strand at 1504.677 kb on - strand at 1504.685 kb on + strand at 1504.685 kb on + strand at 1504.685 kb on + strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1505.043 kb on + strand, within SM_b20703 at 1505.078 kb on + strand, within SM_b20703 at 1505.078 kb on + strand, within SM_b20703 at 1505.078 kb on + strand, within SM_b20703 at 1505.079 kb on - strand, within SM_b20703 at 1505.155 kb on + strand at 1505.156 kb on - strand at 1505.156 kb on - strand at 1505.214 kb on - strand at 1505.265 kb on + strand at 1505.352 kb on - strand at 1505.468 kb on + strand at 1505.468 kb on + strand at 1505.468 kb on + strand at 1505.525 kb on + strand at 1505.590 kb on + strand at 1505.590 kb on + strand at 1505.590 kb on + strand at 1505.725 kb on + strand, within SM_b20704 at 1505.725 kb on + strand, within SM_b20704 at 1505.725 kb on + strand, within SM_b20704 at 1505.726 kb on - strand, within SM_b20704 at 1505.726 kb on - strand, within SM_b20704 at 1505.746 kb on + strand, within SM_b20704 at 1505.746 kb on + strand, within SM_b20704 at 1505.747 kb on - strand, within SM_b20704 at 1505.770 kb on + strand, within SM_b20704 at 1505.899 kb on + strand, within SM_b20704 at 1505.900 kb on - strand, within SM_b20704 at 1505.909 kb on - strand, within SM_b20704 at 1505.909 kb on - strand, within SM_b20704 at 1505.983 kb on + strand, within SM_b20704 at 1505.984 kb on - strand, within SM_b20704 at 1506.016 kb on + strand, within SM_b20704 at 1506.109 kb on + strand, within SM_b20704 at 1506.110 kb on - strand, within SM_b20704 at 1506.204 kb on - strand, within SM_b20704 at 1506.215 kb on + strand, within SM_b20704 at 1506.215 kb on + strand, within SM_b20704 at 1506.254 kb on - strand, within SM_b20704 at 1506.254 kb on - strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.510 kb on - strand, within SM_b20704 at 1506.611 kb on - strand, within SM_b20704 at 1506.617 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.720 kb on - strand, within SM_b20704 at 1506.749 kb on + strand, within SM_b20704 at 1506.749 kb on + strand, within SM_b20704 at 1506.750 kb on - strand, within SM_b20704 at 1506.862 kb on + strand at 1507.097 kb on + strand at 1507.097 kb on + strand at 1507.098 kb on - strand at 1507.098 kb on - strand at 1507.305 kb on - strand at 1507.368 kb on + strand, within SM_b20705 at 1507.391 kb on + strand, within SM_b20705 at 1507.439 kb on - strand, within SM_b20705 at 1507.543 kb on - strand, within SM_b20705 at 1507.569 kb on + strand, within SM_b20705 at 1507.569 kb on + strand, within SM_b20705 at 1507.570 kb on - strand, within SM_b20705 at 1507.590 kb on + strand, within SM_b20705 at 1507.590 kb on + strand, within SM_b20705
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,504,645 + -0.2 1,504,676 + -1.8 1,504,676 + +0.1 1,504,677 - +0.5 1,504,685 + -0.1 1,504,685 + -0.1 1,504,685 + +0.7 1,504,686 - -0.7 1,504,686 - +0.0 1,504,686 - -0.3 1,504,686 - -0.1 1,504,686 - -0.1 1,505,043 + SM_b20703 0.72 +1.0 1,505,078 + SM_b20703 0.79 +0.0 1,505,078 + SM_b20703 0.79 +0.1 1,505,078 + SM_b20703 0.79 +0.0 1,505,079 - SM_b20703 0.79 -1.4 1,505,155 + +0.1 1,505,156 - -0.1 1,505,156 - +0.3 1,505,214 - -0.0 1,505,265 + -1.3 1,505,352 - +0.8 1,505,468 + -0.1 1,505,468 + -0.7 1,505,468 + +0.3 1,505,525 + -0.7 1,505,590 + +0.5 1,505,590 + +1.9 1,505,590 + +1.7 1,505,725 + SM_b20704 0.18 +0.6 1,505,725 + SM_b20704 0.18 +0.6 1,505,725 + SM_b20704 0.18 +0.2 1,505,726 - SM_b20704 0.18 +0.9 1,505,726 - SM_b20704 0.18 -0.3 1,505,746 + SM_b20704 0.20 -0.2 1,505,746 + SM_b20704 0.20 +1.6 1,505,747 - SM_b20704 0.20 +0.1 1,505,770 + SM_b20704 0.21 +0.9 1,505,899 + SM_b20704 0.30 +0.6 1,505,900 - SM_b20704 0.30 +1.2 1,505,909 - SM_b20704 0.31 -0.5 1,505,909 - SM_b20704 0.31 +0.9 1,505,983 + SM_b20704 0.36 +0.1 1,505,984 - SM_b20704 0.36 +0.3 1,506,016 + SM_b20704 0.38 +0.2 1,506,109 + SM_b20704 0.44 -1.0 1,506,110 - SM_b20704 0.44 +0.0 1,506,204 - SM_b20704 0.51 +0.4 1,506,215 + SM_b20704 0.52 -0.6 1,506,215 + SM_b20704 0.52 -0.1 1,506,254 - SM_b20704 0.54 +0.4 1,506,254 - SM_b20704 0.54 +0.6 1,506,509 + SM_b20704 0.72 -0.5 1,506,509 + SM_b20704 0.72 -0.1 1,506,509 + SM_b20704 0.72 +0.4 1,506,509 + SM_b20704 0.72 +0.7 1,506,509 + SM_b20704 0.72 +1.0 1,506,510 - SM_b20704 0.72 +0.5 1,506,611 - SM_b20704 0.79 +0.7 1,506,617 + SM_b20704 0.79 +1.3 1,506,719 + SM_b20704 0.86 +1.3 1,506,719 + SM_b20704 0.86 -0.1 1,506,719 + SM_b20704 0.86 +0.4 1,506,720 - SM_b20704 0.86 +0.4 1,506,749 + SM_b20704 0.88 -0.8 1,506,749 + SM_b20704 0.88 +0.2 1,506,750 - SM_b20704 0.88 -0.6 1,506,862 + +0.5 1,507,097 + +0.2 1,507,097 + -0.8 1,507,098 - -1.4 1,507,098 - -0.7 1,507,305 - -0.1 1,507,368 + SM_b20705 0.14 +0.3 1,507,391 + SM_b20705 0.17 +0.8 1,507,439 - SM_b20705 0.22 -0.5 1,507,543 - SM_b20705 0.34 -0.1 1,507,569 + SM_b20705 0.37 -0.3 1,507,569 + SM_b20705 0.37 +0.3 1,507,570 - SM_b20705 0.37 +0.7 1,507,590 + SM_b20705 0.39 -0.1 1,507,590 + SM_b20705 0.39 +0.4
Or see this region's nucleotide sequence