Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20687 and SM_b20688 are separated by 1 nucleotides SM_b20688 and SM_b20689 are separated by 7 nucleotides SM_b20689 and SM_b20690 overlap by 4 nucleotides
SM_b20687: SM_b20687 - hypothetical protein, at 1,490,711 to 1,491,796
_b20687
SM_b20688: SM_b20688 - hypothetical protein, at 1,491,798 to 1,492,439
_b20688
SM_b20689: SM_b20689 - exodeoxyribonuclease III protein, at 1,492,447 to 1,493,220
_b20689
SM_b20690: SM_b20690 - hypothetical protein, at 1,493,217 to 1,493,543
_b20690
Position (kb)
1491
1492
1493 Strain fitness (log2 ratio)
-1
0
1
2 at 1490.993 kb on - strand, within SM_b20687 at 1491.239 kb on + strand, within SM_b20687 at 1491.239 kb on + strand, within SM_b20687 at 1491.239 kb on + strand, within SM_b20687 at 1491.386 kb on + strand, within SM_b20687 at 1491.489 kb on - strand, within SM_b20687 at 1491.489 kb on - strand, within SM_b20687 at 1491.702 kb on - strand at 1491.702 kb on - strand at 1491.954 kb on + strand, within SM_b20688 at 1491.954 kb on + strand, within SM_b20688 at 1491.957 kb on - strand, within SM_b20688 at 1491.957 kb on - strand, within SM_b20688 at 1492.018 kb on + strand, within SM_b20688 at 1492.023 kb on + strand, within SM_b20688 at 1492.211 kb on + strand, within SM_b20688 at 1492.309 kb on - strand, within SM_b20688 at 1492.600 kb on + strand, within SM_b20689 at 1492.708 kb on - strand, within SM_b20689 at 1492.763 kb on - strand, within SM_b20689 at 1492.918 kb on + strand, within SM_b20689 at 1492.918 kb on + strand, within SM_b20689 at 1492.919 kb on - strand, within SM_b20689 at 1492.933 kb on + strand, within SM_b20689 at 1492.934 kb on - strand, within SM_b20689 at 1493.198 kb on + strand at 1493.198 kb on + strand at 1493.219 kb on - strand at 1493.219 kb on - strand at 1493.219 kb on - strand at 1493.325 kb on + strand, within SM_b20690
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,490,993 - SM_b20687 0.26 -0.7 1,491,239 + SM_b20687 0.49 -0.2 1,491,239 + SM_b20687 0.49 -1.7 1,491,239 + SM_b20687 0.49 -0.0 1,491,386 + SM_b20687 0.62 -1.0 1,491,489 - SM_b20687 0.72 +0.2 1,491,489 - SM_b20687 0.72 +1.5 1,491,702 - +2.4 1,491,702 - -1.0 1,491,954 + SM_b20688 0.24 -0.1 1,491,954 + SM_b20688 0.24 -0.0 1,491,957 - SM_b20688 0.25 -0.4 1,491,957 - SM_b20688 0.25 -0.8 1,492,018 + SM_b20688 0.34 +0.1 1,492,023 + SM_b20688 0.35 -1.0 1,492,211 + SM_b20688 0.64 -0.8 1,492,309 - SM_b20688 0.80 -0.3 1,492,600 + SM_b20689 0.20 +0.4 1,492,708 - SM_b20689 0.34 +0.1 1,492,763 - SM_b20689 0.41 +0.5 1,492,918 + SM_b20689 0.61 +0.6 1,492,918 + SM_b20689 0.61 -0.3 1,492,919 - SM_b20689 0.61 -0.3 1,492,933 + SM_b20689 0.63 +0.2 1,492,934 - SM_b20689 0.63 +0.1 1,493,198 + -0.5 1,493,198 + +0.4 1,493,219 - -1.7 1,493,219 - +1.3 1,493,219 - +0.3 1,493,325 + SM_b20690 0.33 -1.4
Or see this region's nucleotide sequence