Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20688
Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | copper (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
1,490,993 | - | SM_b20687 | 0.26 | -0.7 | |
1,491,239 | + | SM_b20687 | 0.49 | -0.2 | |
1,491,239 | + | SM_b20687 | 0.49 | -1.7 | |
1,491,239 | + | SM_b20687 | 0.49 | -0.0 | |
1,491,386 | + | SM_b20687 | 0.62 | -1.0 | |
1,491,489 | - | SM_b20687 | 0.72 | +0.2 | |
1,491,489 | - | SM_b20687 | 0.72 | +1.5 | |
1,491,702 | - | +2.4 | |||
1,491,702 | - | -1.0 | |||
1,491,954 | + | SM_b20688 | 0.24 | -0.1 | |
1,491,954 | + | SM_b20688 | 0.24 | -0.0 | |
1,491,957 | - | SM_b20688 | 0.25 | -0.4 | |
1,491,957 | - | SM_b20688 | 0.25 | -0.8 | |
1,492,018 | + | SM_b20688 | 0.34 | +0.1 | |
1,492,023 | + | SM_b20688 | 0.35 | -1.0 | |
1,492,211 | + | SM_b20688 | 0.64 | -0.8 | |
1,492,309 | - | SM_b20688 | 0.80 | -0.3 | |
1,492,600 | + | SM_b20689 | 0.20 | +0.4 | |
1,492,708 | - | SM_b20689 | 0.34 | +0.1 | |
1,492,763 | - | SM_b20689 | 0.41 | +0.5 | |
1,492,918 | + | SM_b20689 | 0.61 | +0.6 | |
1,492,918 | + | SM_b20689 | 0.61 | -0.3 | |
1,492,919 | - | SM_b20689 | 0.61 | -0.3 | |
1,492,933 | + | SM_b20689 | 0.63 | +0.2 | |
1,492,934 | - | SM_b20689 | 0.63 | +0.1 | |
1,493,198 | + | -0.5 | |||
1,493,198 | + | +0.4 | |||
1,493,219 | - | -1.7 | |||
1,493,219 | - | +1.3 | |||
1,493,219 | - | +0.3 | |||
1,493,325 | + | SM_b20690 | 0.33 | -1.4 |
Or see this region's nucleotide sequence