Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20672 and SM_b20673 overlap by 4 nucleotides SM_b20673 and SM_b20674 are separated by 211 nucleotides
SM_b20672: SM_b20672 - sugar uptake ABC transporter permease, at 1,473,003 to 1,474,325
_b20672
SM_b20673: SM_b20673 - sugar uptake ABC transporter ATP-binding protein, at 1,474,322 to 1,475,902
_b20673
SM_b20674: SM_b20674 - LacI family transcriptional regulator, at 1,476,114 to 1,477,133
_b20674
Position (kb)
1474
1475
1476 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1473.379 kb on + strand, within SM_b20672 at 1473.379 kb on + strand, within SM_b20672 at 1473.421 kb on + strand, within SM_b20672 at 1473.421 kb on + strand, within SM_b20672 at 1473.422 kb on - strand, within SM_b20672 at 1473.422 kb on - strand, within SM_b20672 at 1473.422 kb on - strand, within SM_b20672 at 1473.493 kb on + strand, within SM_b20672 at 1473.499 kb on + strand, within SM_b20672 at 1473.500 kb on - strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.562 kb on - strand, within SM_b20672 at 1473.605 kb on + strand, within SM_b20672 at 1473.605 kb on + strand, within SM_b20672 at 1473.636 kb on - strand, within SM_b20672 at 1473.929 kb on + strand, within SM_b20672 at 1473.930 kb on - strand, within SM_b20672 at 1473.978 kb on + strand, within SM_b20672 at 1473.978 kb on + strand, within SM_b20672 at 1473.979 kb on - strand, within SM_b20672 at 1474.033 kb on + strand, within SM_b20672 at 1474.033 kb on + strand, within SM_b20672 at 1474.120 kb on - strand, within SM_b20672 at 1474.177 kb on - strand, within SM_b20672 at 1474.288 kb on + strand at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.528 kb on - strand, within SM_b20673 at 1474.528 kb on - strand, within SM_b20673 at 1475.082 kb on + strand, within SM_b20673 at 1475.167 kb on + strand, within SM_b20673 at 1475.167 kb on + strand, within SM_b20673 at 1475.272 kb on + strand, within SM_b20673 at 1475.272 kb on + strand, within SM_b20673 at 1475.272 kb on + strand, within SM_b20673 at 1475.273 kb on - strand, within SM_b20673 at 1475.274 kb on + strand, within SM_b20673 at 1475.275 kb on - strand, within SM_b20673 at 1475.691 kb on + strand, within SM_b20673 at 1475.691 kb on + strand, within SM_b20673 at 1475.700 kb on + strand, within SM_b20673 at 1475.890 kb on + strand at 1476.232 kb on + strand, within SM_b20674 at 1476.237 kb on + strand, within SM_b20674 at 1476.238 kb on - strand, within SM_b20674 at 1476.238 kb on - strand, within SM_b20674 at 1476.289 kb on + strand, within SM_b20674 at 1476.289 kb on + strand, within SM_b20674 at 1476.289 kb on + strand, within SM_b20674 at 1476.612 kb on + strand, within SM_b20674 at 1476.612 kb on + strand, within SM_b20674 at 1476.612 kb on + strand, within SM_b20674 at 1476.612 kb on + strand, within SM_b20674 at 1476.612 kb on + strand, within SM_b20674 at 1476.613 kb on - strand, within SM_b20674 at 1476.613 kb on - strand, within SM_b20674 at 1476.613 kb on - strand, within SM_b20674 at 1476.613 kb on - strand, within SM_b20674 at 1476.613 kb on - strand, within SM_b20674 at 1476.615 kb on - strand, within SM_b20674 at 1476.615 kb on - strand, within SM_b20674 at 1476.615 kb on - strand, within SM_b20674 at 1476.615 kb on - strand, within SM_b20674 at 1476.646 kb on - strand, within SM_b20674 at 1476.777 kb on + strand, within SM_b20674
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,473,379 + SM_b20672 0.28 +0.1 1,473,379 + SM_b20672 0.28 -0.1 1,473,421 + SM_b20672 0.32 +0.8 1,473,421 + SM_b20672 0.32 -0.3 1,473,422 - SM_b20672 0.32 -0.5 1,473,422 - SM_b20672 0.32 -0.7 1,473,422 - SM_b20672 0.32 -0.2 1,473,493 + SM_b20672 0.37 -1.3 1,473,499 + SM_b20672 0.37 +0.4 1,473,500 - SM_b20672 0.38 +0.5 1,473,561 + SM_b20672 0.42 -0.1 1,473,561 + SM_b20672 0.42 +0.4 1,473,561 + SM_b20672 0.42 -2.3 1,473,561 + SM_b20672 0.42 +0.2 1,473,562 - SM_b20672 0.42 -0.1 1,473,605 + SM_b20672 0.46 -0.2 1,473,605 + SM_b20672 0.46 +0.1 1,473,636 - SM_b20672 0.48 -2.4 1,473,929 + SM_b20672 0.70 +0.0 1,473,930 - SM_b20672 0.70 -0.1 1,473,978 + SM_b20672 0.74 -0.6 1,473,978 + SM_b20672 0.74 -0.0 1,473,979 - SM_b20672 0.74 -0.5 1,474,033 + SM_b20672 0.78 +0.2 1,474,033 + SM_b20672 0.78 +0.6 1,474,120 - SM_b20672 0.84 -0.3 1,474,177 - SM_b20672 0.89 +0.1 1,474,288 + -1.1 1,474,527 + SM_b20673 0.13 +0.6 1,474,527 + SM_b20673 0.13 +0.8 1,474,527 + SM_b20673 0.13 -1.1 1,474,527 + SM_b20673 0.13 -0.1 1,474,527 + SM_b20673 0.13 -0.4 1,474,527 + SM_b20673 0.13 -0.6 1,474,527 + SM_b20673 0.13 +0.2 1,474,527 + SM_b20673 0.13 +0.1 1,474,528 - SM_b20673 0.13 +0.6 1,474,528 - SM_b20673 0.13 -0.2 1,475,082 + SM_b20673 0.48 -0.3 1,475,167 + SM_b20673 0.53 +0.7 1,475,167 + SM_b20673 0.53 -0.5 1,475,272 + SM_b20673 0.60 -0.3 1,475,272 + SM_b20673 0.60 +1.8 1,475,272 + SM_b20673 0.60 -0.6 1,475,273 - SM_b20673 0.60 -0.2 1,475,274 + SM_b20673 0.60 -0.0 1,475,275 - SM_b20673 0.60 -0.4 1,475,691 + SM_b20673 0.87 -0.1 1,475,691 + SM_b20673 0.87 -0.8 1,475,700 + SM_b20673 0.87 +0.7 1,475,890 + +0.3 1,476,232 + SM_b20674 0.12 +0.3 1,476,237 + SM_b20674 0.12 -0.0 1,476,238 - SM_b20674 0.12 +0.2 1,476,238 - SM_b20674 0.12 +0.3 1,476,289 + SM_b20674 0.17 -0.4 1,476,289 + SM_b20674 0.17 -1.3 1,476,289 + SM_b20674 0.17 -0.3 1,476,612 + SM_b20674 0.49 -0.1 1,476,612 + SM_b20674 0.49 +0.1 1,476,612 + SM_b20674 0.49 +0.4 1,476,612 + SM_b20674 0.49 -0.4 1,476,612 + SM_b20674 0.49 +0.3 1,476,613 - SM_b20674 0.49 -0.3 1,476,613 - SM_b20674 0.49 +0.4 1,476,613 - SM_b20674 0.49 +0.5 1,476,613 - SM_b20674 0.49 -0.1 1,476,613 - SM_b20674 0.49 +0.2 1,476,615 - SM_b20674 0.49 -0.3 1,476,615 - SM_b20674 0.49 -0.6 1,476,615 - SM_b20674 0.49 -0.1 1,476,615 - SM_b20674 0.49 -0.6 1,476,646 - SM_b20674 0.52 +0.8 1,476,777 + SM_b20674 0.65 +0.5
Or see this region's nucleotide sequence