Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20620 and SM_b20621 are separated by 46 nucleotides SM_b20621 and SM_b20622 are separated by 79 nucleotides
SM_b20620: SM_b20620 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,639,432 to 1,640,475
_b20620
SM_b20621: SM_b20621 - sugar uptake ABC transporter permease, at 1,640,522 to 1,641,478
_b20621
SM_b20622: SM_b20622 - sugar uptake ABC transporter ATP-binding protein, at 1,641,558 to 1,643,081
_b20622
Position (kb)
1640
1641
1642 Strain fitness (log2 ratio)
-2
-1
0
1 at 1639.722 kb on - strand, within SM_b20620 at 1639.913 kb on + strand, within SM_b20620 at 1639.977 kb on - strand, within SM_b20620 at 1639.982 kb on + strand, within SM_b20620 at 1639.983 kb on - strand, within SM_b20620 at 1639.983 kb on - strand, within SM_b20620 at 1640.176 kb on - strand, within SM_b20620 at 1640.201 kb on - strand, within SM_b20620 at 1640.218 kb on - strand, within SM_b20620 at 1640.218 kb on - strand, within SM_b20620 at 1640.306 kb on + strand, within SM_b20620 at 1640.307 kb on - strand, within SM_b20620 at 1640.336 kb on + strand, within SM_b20620 at 1640.468 kb on - strand at 1640.555 kb on - strand at 1640.604 kb on + strand at 1640.604 kb on + strand at 1640.607 kb on + strand at 1640.607 kb on + strand at 1640.607 kb on + strand at 1640.608 kb on - strand at 1640.640 kb on - strand, within SM_b20621 at 1640.640 kb on - strand, within SM_b20621 at 1640.640 kb on - strand, within SM_b20621 at 1640.806 kb on + strand, within SM_b20621 at 1640.833 kb on - strand, within SM_b20621 at 1640.847 kb on + strand, within SM_b20621 at 1640.847 kb on + strand, within SM_b20621 at 1640.905 kb on - strand, within SM_b20621 at 1640.909 kb on + strand, within SM_b20621 at 1640.909 kb on + strand, within SM_b20621 at 1640.909 kb on + strand, within SM_b20621 at 1640.909 kb on + strand, within SM_b20621 at 1640.910 kb on - strand, within SM_b20621 at 1640.951 kb on + strand, within SM_b20621 at 1641.236 kb on + strand, within SM_b20621 at 1641.237 kb on - strand, within SM_b20621 at 1641.237 kb on - strand, within SM_b20621 at 1641.282 kb on + strand, within SM_b20621 at 1641.282 kb on + strand, within SM_b20621 at 1641.282 kb on + strand, within SM_b20621 at 1641.282 kb on + strand, within SM_b20621 at 1641.283 kb on - strand, within SM_b20621 at 1641.283 kb on - strand, within SM_b20621 at 1641.283 kb on - strand, within SM_b20621 at 1641.490 kb on - strand at 1641.975 kb on + strand, within SM_b20622 at 1641.976 kb on - strand, within SM_b20622 at 1642.024 kb on + strand, within SM_b20622 at 1642.025 kb on - strand, within SM_b20622 at 1642.025 kb on - strand, within SM_b20622 at 1642.120 kb on + strand, within SM_b20622 at 1642.210 kb on - strand, within SM_b20622 at 1642.378 kb on + strand, within SM_b20622 at 1642.378 kb on + strand at 1642.478 kb on + strand, within SM_b20622 at 1642.478 kb on + strand, within SM_b20622
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,639,722 - SM_b20620 0.28 +0.2 1,639,913 + SM_b20620 0.46 +0.3 1,639,977 - SM_b20620 0.52 -0.5 1,639,982 + SM_b20620 0.53 +0.3 1,639,983 - SM_b20620 0.53 +0.2 1,639,983 - SM_b20620 0.53 +0.5 1,640,176 - SM_b20620 0.71 -0.0 1,640,201 - SM_b20620 0.74 -0.5 1,640,218 - SM_b20620 0.75 +0.7 1,640,218 - SM_b20620 0.75 -0.7 1,640,306 + SM_b20620 0.84 +0.9 1,640,307 - SM_b20620 0.84 -0.1 1,640,336 + SM_b20620 0.87 +0.4 1,640,468 - -1.8 1,640,555 - -2.6 1,640,604 + -0.1 1,640,604 + +0.4 1,640,607 + +0.1 1,640,607 + +0.1 1,640,607 + -0.4 1,640,608 - -0.1 1,640,640 - SM_b20621 0.12 -0.7 1,640,640 - SM_b20621 0.12 -0.6 1,640,640 - SM_b20621 0.12 -0.5 1,640,806 + SM_b20621 0.30 -0.4 1,640,833 - SM_b20621 0.32 -0.6 1,640,847 + SM_b20621 0.34 +0.0 1,640,847 + SM_b20621 0.34 -0.2 1,640,905 - SM_b20621 0.40 +1.0 1,640,909 + SM_b20621 0.40 -2.2 1,640,909 + SM_b20621 0.40 +0.1 1,640,909 + SM_b20621 0.40 +0.2 1,640,909 + SM_b20621 0.40 -0.1 1,640,910 - SM_b20621 0.41 +0.2 1,640,951 + SM_b20621 0.45 -1.4 1,641,236 + SM_b20621 0.75 +1.3 1,641,237 - SM_b20621 0.75 +0.4 1,641,237 - SM_b20621 0.75 -0.0 1,641,282 + SM_b20621 0.79 +0.1 1,641,282 + SM_b20621 0.79 +0.3 1,641,282 + SM_b20621 0.79 -0.2 1,641,282 + SM_b20621 0.79 +1.4 1,641,283 - SM_b20621 0.80 -0.1 1,641,283 - SM_b20621 0.80 +0.3 1,641,283 - SM_b20621 0.80 -1.3 1,641,490 - +0.7 1,641,975 + SM_b20622 0.27 -0.2 1,641,976 - SM_b20622 0.27 +0.5 1,642,024 + SM_b20622 0.31 +0.2 1,642,025 - SM_b20622 0.31 -0.5 1,642,025 - SM_b20622 0.31 -0.3 1,642,120 + SM_b20622 0.37 +1.5 1,642,210 - SM_b20622 0.43 -1.9 1,642,378 + SM_b20622 0.54 -1.3 1,642,378 + +1.5 1,642,478 + SM_b20622 0.60 +1.4 1,642,478 + SM_b20622 0.60 +0.4
Or see this region's nucleotide sequence