Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20615 and SM_b20616 are separated by 1 nucleotides SM_b20616 and SM_b20617 are separated by 196 nucleotides SM_b20617 and SM_b20618 overlap by 4 nucleotides
SM_b20615: SM_b20615 - thiamine biosynthesis protein ThiC, at 1,633,944 to 1,635,779
_b20615
SM_b20616: SM_b20616 - thiamine biosynthesis oxidoreductase, at 1,635,781 to 1,636,758
_b20616
SM_b20617: SM_b20617 - thiazole synthase, at 1,636,955 to 1,637,728
_b20617
SM_b20618: SM_b20618 - thiamine-phosphate pyrophosphorylase, at 1,637,725 to 1,638,330
_b20618
Position (kb)
1635
1636
1637 Strain fitness (log2 ratio)
-2
-1
0
1 at 1634.896 kb on - strand, within SM_b20615 at 1634.897 kb on + strand, within SM_b20615 at 1634.898 kb on - strand, within SM_b20615 at 1634.994 kb on + strand, within SM_b20615 at 1634.995 kb on - strand, within SM_b20615 at 1635.012 kb on - strand, within SM_b20615 at 1635.033 kb on + strand, within SM_b20615 at 1635.033 kb on + strand, within SM_b20615 at 1635.033 kb on + strand, within SM_b20615 at 1635.194 kb on + strand, within SM_b20615 at 1635.194 kb on + strand, within SM_b20615 at 1635.195 kb on - strand, within SM_b20615 at 1635.255 kb on + strand, within SM_b20615 at 1635.257 kb on + strand, within SM_b20615 at 1635.257 kb on + strand, within SM_b20615 at 1635.360 kb on + strand, within SM_b20615 at 1635.361 kb on - strand, within SM_b20615 at 1635.735 kb on + strand at 1635.735 kb on + strand at 1635.735 kb on + strand at 1635.736 kb on - strand at 1635.857 kb on + strand at 1635.858 kb on - strand at 1635.858 kb on - strand at 1636.429 kb on + strand, within SM_b20616 at 1636.431 kb on + strand, within SM_b20616 at 1636.749 kb on + strand at 1636.919 kb on + strand at 1636.967 kb on + strand at 1636.967 kb on + strand at 1637.743 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,634,896 - SM_b20615 0.52 -0.4 1,634,897 + SM_b20615 0.52 -0.4 1,634,898 - SM_b20615 0.52 -2.1 1,634,994 + SM_b20615 0.57 +0.7 1,634,995 - SM_b20615 0.57 -0.1 1,635,012 - SM_b20615 0.58 +0.2 1,635,033 + SM_b20615 0.59 -0.2 1,635,033 + SM_b20615 0.59 +0.2 1,635,033 + SM_b20615 0.59 -0.5 1,635,194 + SM_b20615 0.68 +0.2 1,635,194 + SM_b20615 0.68 +0.0 1,635,195 - SM_b20615 0.68 +0.4 1,635,255 + SM_b20615 0.71 -0.3 1,635,257 + SM_b20615 0.72 -0.8 1,635,257 + SM_b20615 0.72 +0.1 1,635,360 + SM_b20615 0.77 +0.9 1,635,361 - SM_b20615 0.77 +0.0 1,635,735 + +0.1 1,635,735 + +0.3 1,635,735 + -0.6 1,635,736 - +0.0 1,635,857 + -0.1 1,635,858 - -0.1 1,635,858 - -0.7 1,636,429 + SM_b20616 0.66 -0.6 1,636,431 + SM_b20616 0.66 -1.9 1,636,749 + +0.0 1,636,919 + -0.8 1,636,967 + -1.5 1,636,967 + -0.6 1,637,743 + -0.7
Or see this region's nucleotide sequence