Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20529 and SM_b20530 are separated by 32 nucleotides SM_b20530 and SM_b20531 are separated by 234 nucleotides SM_b20531 and SM_b20532 are separated by 1 nucleotides
SM_b20529: SM_b20529 - hypothetical protein, at 553,445 to 554,374
_b20529
SM_b20530: SM_b20530 - hypothetical protein, at 554,407 to 554,745
_b20530
SM_b20531: SM_b20531 - RNA polymerase sigma factor, at 554,980 to 555,516
_b20531
SM_b20532: SM_b20532 - hypothetical protein, at 555,518 to 556,156
_b20532
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 554.001 kb on + strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.120 kb on - strand, within SM_b20529 at 554.151 kb on + strand, within SM_b20529 at 554.152 kb on - strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.206 kb on - strand, within SM_b20529 at 554.206 kb on - strand, within SM_b20529 at 554.517 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.809 kb on + strand at 554.809 kb on + strand at 554.810 kb on - strand at 554.810 kb on - strand at 554.823 kb on - strand at 554.877 kb on - strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 555.050 kb on - strand, within SM_b20531 at 555.050 kb on - strand, within SM_b20531 at 555.167 kb on + strand, within SM_b20531 at 555.167 kb on + strand, within SM_b20531 at 555.168 kb on - strand, within SM_b20531 at 555.168 kb on - strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.178 kb on - strand, within SM_b20531 at 555.249 kb on - strand, within SM_b20531 at 555.249 kb on - strand, within SM_b20531 at 555.393 kb on + strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.395 kb on + strand, within SM_b20531 at 555.643 kb on - strand, within SM_b20532 at 555.664 kb on + strand, within SM_b20532 at 555.667 kb on + strand, within SM_b20532 at 555.966 kb on - strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.159 kb on - strand at 556.181 kb on - strand at 556.196 kb on - strand at 556.318 kb on + strand at 556.372 kb on + strand at 556.372 kb on + strand at 556.372 kb on + strand at 556.373 kb on - strand at 556.373 kb on - strand at 556.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 554,001 + SM_b20529 0.60 +0.1 554,001 + SM_b20529 0.60 -0.8 554,001 + SM_b20529 0.60 -0.5 554,120 - SM_b20529 0.73 -0.3 554,151 + SM_b20529 0.76 -0.1 554,152 - SM_b20529 0.76 +1.1 554,205 + SM_b20529 0.82 +2.1 554,205 + SM_b20529 0.82 +0.4 554,205 + SM_b20529 0.82 -0.7 554,206 - SM_b20529 0.82 +0.2 554,206 - SM_b20529 0.82 +0.6 554,517 - SM_b20530 0.32 -0.0 554,595 - SM_b20530 0.55 +0.9 554,595 - SM_b20530 0.55 -0.6 554,595 - SM_b20530 0.55 -0.3 554,595 - SM_b20530 0.55 -0.5 554,595 - SM_b20530 0.55 -1.3 554,809 + -0.1 554,809 + +0.1 554,810 - -0.3 554,810 - -1.5 554,823 - -0.5 554,877 - -0.2 554,940 + +0.3 554,940 + +0.4 554,940 + +0.2 554,940 + +0.2 554,940 + +0.1 554,941 - +0.1 554,941 - -1.1 554,941 - -0.7 554,941 - -0.3 554,941 - +0.0 555,050 - SM_b20531 0.13 -0.1 555,050 - SM_b20531 0.13 +1.5 555,167 + SM_b20531 0.35 -0.6 555,167 + SM_b20531 0.35 +0.4 555,168 - SM_b20531 0.35 +0.3 555,168 - SM_b20531 0.35 +0.0 555,177 + SM_b20531 0.37 -0.3 555,177 + SM_b20531 0.37 -0.4 555,177 + SM_b20531 0.37 +0.2 555,177 + SM_b20531 0.37 +0.2 555,177 + SM_b20531 0.37 -0.7 555,178 - SM_b20531 0.37 +0.0 555,249 - SM_b20531 0.50 -1.6 555,249 - SM_b20531 0.50 +1.1 555,393 + SM_b20531 0.77 -0.7 555,394 - SM_b20531 0.77 +0.1 555,394 - SM_b20531 0.77 -0.1 555,394 - SM_b20531 0.77 -0.9 555,394 - SM_b20531 0.77 +0.8 555,394 - SM_b20531 0.77 -1.1 555,394 - SM_b20531 0.77 -1.0 555,394 - SM_b20531 0.77 -1.1 555,395 + SM_b20531 0.77 +0.0 555,643 - SM_b20532 0.20 -0.2 555,664 + SM_b20532 0.23 -0.9 555,667 + SM_b20532 0.23 -2.2 555,966 - SM_b20532 0.70 +2.5 556,040 + SM_b20532 0.82 -0.3 556,040 + SM_b20532 0.82 -1.6 556,040 + SM_b20532 0.82 -0.6 556,040 + SM_b20532 0.82 -0.1 556,040 + SM_b20532 0.82 -0.7 556,041 - SM_b20532 0.82 -0.7 556,041 - SM_b20532 0.82 -0.2 556,041 - SM_b20532 0.82 -0.7 556,041 - SM_b20532 0.82 -0.9 556,041 - SM_b20532 0.82 -0.3 556,041 - SM_b20532 0.82 -0.0 556,159 - +0.1 556,181 - -0.6 556,196 - -0.3 556,318 + +0.1 556,372 + +0.6 556,372 + +0.1 556,372 + +0.4 556,373 - +0.2 556,373 - -1.0 556,373 - -1.1
Or see this region's nucleotide sequence