Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20505 and SM_b20506 are separated by 43 nucleotides SM_b20506 and SM_b20507 are separated by 2 nucleotides SM_b20507 and SM_b20508 are separated by 64 nucleotides
SM_b20505: SM_b20505 - trifolitoxin immunity protein, at 527,073 to 527,861
_b20505
SM_b20506: SM_b20506 - L-arabinose transporter permease, at 527,905 to 528,858
_b20506
SM_b20507: SM_b20507 - L-arabinose transporter ATP-binding protein, at 528,861 to 530,387
_b20507
SM_b20508: SM_b20508 - sugar ABC transporter substrate-binding protein, at 530,452 to 531,435
_b20508
Position (kb) 528
529
530
531 Strain fitness (log2 ratio) -2
-1
0
1
2 at 527.887 kb on + strand at 527.937 kb on + strand at 527.937 kb on + strand at 527.938 kb on - strand at 527.984 kb on + strand at 527.990 kb on + strand at 527.990 kb on + strand at 527.991 kb on - strand at 527.991 kb on - strand at 527.991 kb on - strand at 528.053 kb on - strand, within SM_b20506 at 528.202 kb on + strand, within SM_b20506 at 528.203 kb on - strand, within SM_b20506 at 528.316 kb on - strand, within SM_b20506 at 528.470 kb on - strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.589 kb on + strand, within SM_b20506 at 528.640 kb on + strand, within SM_b20506 at 528.867 kb on + strand at 528.867 kb on + strand at 528.867 kb on + strand at 528.867 kb on + strand at 528.868 kb on - strand at 528.868 kb on - strand at 528.868 kb on - strand at 528.868 kb on - strand at 529.034 kb on + strand, within SM_b20507 at 529.281 kb on - strand, within SM_b20507 at 529.489 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.805 kb on - strand, within SM_b20507 at 529.805 kb on - strand, within SM_b20507 at 529.817 kb on + strand, within SM_b20507 at 530.115 kb on + strand, within SM_b20507 at 530.179 kb on + strand, within SM_b20507 at 530.199 kb on + strand, within SM_b20507 at 530.200 kb on - strand, within SM_b20507 at 530.247 kb on + strand at 530.247 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.561 kb on + strand, within SM_b20508 at 530.561 kb on + strand, within SM_b20508 at 530.561 kb on + strand, within SM_b20508 at 530.561 kb on + strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.942 kb on + strand, within SM_b20508 at 530.943 kb on - strand, within SM_b20508 at 531.048 kb on + strand, within SM_b20508 at 531.229 kb on + strand, within SM_b20508 at 531.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 527,887 + -0.4 527,937 + +0.0 527,937 + +0.3 527,938 - +0.9 527,984 + -1.2 527,990 + -2.5 527,990 + +1.1 527,991 - +0.2 527,991 - -0.5 527,991 - -0.4 528,053 - SM_b20506 0.16 +0.1 528,202 + SM_b20506 0.31 +0.1 528,203 - SM_b20506 0.31 -0.3 528,316 - SM_b20506 0.43 +1.2 528,470 - SM_b20506 0.59 -0.0 528,496 + SM_b20506 0.62 -0.3 528,496 + SM_b20506 0.62 +0.4 528,496 + SM_b20506 0.62 -0.2 528,589 + SM_b20506 0.72 -0.3 528,640 + SM_b20506 0.77 +0.4 528,867 + +0.7 528,867 + -1.4 528,867 + -0.0 528,867 + -0.2 528,868 - +2.1 528,868 - +0.0 528,868 - -0.7 528,868 - -0.1 529,034 + SM_b20507 0.11 +0.9 529,281 - SM_b20507 0.28 +0.8 529,489 + SM_b20507 0.41 -0.1 529,804 + SM_b20507 0.62 -0.9 529,804 + SM_b20507 0.62 -0.0 529,804 + SM_b20507 0.62 +0.2 529,804 + SM_b20507 0.62 +0.2 529,804 + SM_b20507 0.62 +0.3 529,805 - SM_b20507 0.62 +0.4 529,805 - SM_b20507 0.62 +0.0 529,817 + SM_b20507 0.63 -0.3 530,115 + SM_b20507 0.82 -0.2 530,179 + SM_b20507 0.86 -0.2 530,199 + SM_b20507 0.88 -0.3 530,200 - SM_b20507 0.88 -0.2 530,247 + +0.1 530,247 + -0.0 530,486 + +0.2 530,486 + -1.4 530,487 - -1.2 530,487 - +0.3 530,487 - -0.6 530,487 - -0.2 530,487 - +0.4 530,561 + SM_b20508 0.11 -0.4 530,561 + SM_b20508 0.11 +0.3 530,561 + SM_b20508 0.11 -1.0 530,561 + SM_b20508 0.11 -0.4 530,562 - SM_b20508 0.11 -0.4 530,562 - SM_b20508 0.11 -0.1 530,562 - SM_b20508 0.11 -0.2 530,562 - SM_b20508 0.11 +0.8 530,562 - SM_b20508 0.11 -0.5 530,942 + SM_b20508 0.50 +0.9 530,943 - SM_b20508 0.50 +0.4 531,048 + SM_b20508 0.61 +0.7 531,229 + SM_b20508 0.79 +0.3 531,358 + -0.5
Or see this region's nucleotide sequence