Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20503

Experiment: copper (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20502 and SM_b20503 are separated by 19 nucleotidesSM_b20503 and SM_b20504 are separated by 65 nucleotides SM_b20502: SM_b20502 - sugar ABC transporter permease, at 523,185 to 524,177 _b20502 SM_b20503: SM_b20503 - sugar ABC transporter ATP-binding protein, at 524,197 to 525,735 _b20503 SM_b20504: SM_b20504 - sugar ABC transporter substrate-binding protein, at 525,801 to 526,802 _b20504 Position (kb) 524 525 526Strain fitness (log2 ratio) -2 -1 0 1at 523.239 kb on + strandat 523.239 kb on + strandat 523.240 kb on - strandat 523.256 kb on + strandat 523.257 kb on - strandat 523.257 kb on - strandat 523.268 kb on - strandat 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.565 kb on - strand, within SM_b20502at 523.645 kb on + strand, within SM_b20502at 523.646 kb on - strand, within SM_b20502at 523.665 kb on - strand, within SM_b20502at 523.775 kb on + strand, within SM_b20502at 523.775 kb on + strand, within SM_b20502at 523.775 kb on + strand, within SM_b20502at 523.776 kb on - strand, within SM_b20502at 524.165 kb on + strandat 524.166 kb on - strandat 524.177 kb on + strandat 524.177 kb on + strandat 524.557 kb on - strand, within SM_b20503at 524.733 kb on - strand, within SM_b20503at 524.763 kb on - strand, within SM_b20503at 524.965 kb on + strand, within SM_b20503at 525.077 kb on + strand, within SM_b20503at 525.078 kb on - strand, within SM_b20503at 525.078 kb on - strand, within SM_b20503at 525.078 kb on - strand, within SM_b20503at 525.142 kb on - strand, within SM_b20503at 525.142 kb on - strand, within SM_b20503at 525.144 kb on + strand, within SM_b20503at 525.144 kb on + strand, within SM_b20503at 525.145 kb on - strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.147 kb on - strand, within SM_b20503at 525.147 kb on - strand, within SM_b20503at 525.147 kb on - strand, within SM_b20503at 525.147 kb on - strand, within SM_b20503at 525.147 kb on - strand, within SM_b20503at 525.386 kb on + strand, within SM_b20503at 525.387 kb on - strand, within SM_b20503at 525.661 kb on + strandat 525.661 kb on + strandat 525.803 kb on - strandat 525.822 kb on - strandat 525.838 kb on + strandat 525.999 kb on - strand, within SM_b20504at 525.999 kb on - strand, within SM_b20504at 526.000 kb on + strand, within SM_b20504at 526.000 kb on + strand, within SM_b20504at 526.001 kb on - strand, within SM_b20504at 526.065 kb on + strand, within SM_b20504at 526.068 kb on - strand, within SM_b20504at 526.068 kb on - strand, within SM_b20504at 526.068 kb on - strand, within SM_b20504at 526.213 kb on + strand, within SM_b20504at 526.213 kb on + strand, within SM_b20504at 526.213 kb on + strand, within SM_b20504at 526.214 kb on - strand, within SM_b20504at 526.214 kb on - strand, within SM_b20504at 526.349 kb on - strand, within SM_b20504at 526.393 kb on + strand, within SM_b20504at 526.393 kb on + strand, within SM_b20504at 526.393 kb on + strand, within SM_b20504at 526.393 kb on + strand, within SM_b20504at 526.393 kb on + strand, within SM_b20504at 526.393 kb on + strand, within SM_b20504at 526.393 kb on + strand, within SM_b20504at 526.393 kb on + strand, within SM_b20504at 526.394 kb on - strand, within SM_b20504at 526.394 kb on - strand, within SM_b20504at 526.394 kb on - strand, within SM_b20504at 526.394 kb on - strand, within SM_b20504at 526.394 kb on - strand, within SM_b20504at 526.397 kb on + strand, within SM_b20504at 526.397 kb on + strand, within SM_b20504at 526.426 kb on + strand, within SM_b20504at 526.427 kb on - strand, within SM_b20504at 526.432 kb on - strand, within SM_b20504at 526.603 kb on + strand, within SM_b20504at 526.622 kb on - strand, within SM_b20504at 526.622 kb on - strand, within SM_b20504at 526.685 kb on - strand, within SM_b20504at 526.718 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
remove
523,239 + +0.3
523,239 + -0.4
523,240 - -0.6
523,256 + -0.2
523,257 - +1.0
523,257 - -0.4
523,268 - -0.4
523,453 + SM_b20502 0.27 -0.2
523,453 + SM_b20502 0.27 -1.5
523,453 + SM_b20502 0.27 -0.2
523,453 + SM_b20502 0.27 +0.3
523,453 + SM_b20502 0.27 +1.3
523,453 + SM_b20502 0.27 -0.1
523,453 + SM_b20502 0.27 +0.6
523,454 - SM_b20502 0.27 +0.1
523,454 - SM_b20502 0.27 -0.7
523,454 - SM_b20502 0.27 -0.2
523,454 - SM_b20502 0.27 -0.3
523,454 - SM_b20502 0.27 +1.4
523,565 - SM_b20502 0.38 +0.7
523,645 + SM_b20502 0.46 +0.4
523,646 - SM_b20502 0.46 -1.7
523,665 - SM_b20502 0.48 -1.4
523,775 + SM_b20502 0.59 +0.5
523,775 + SM_b20502 0.59 -0.2
523,775 + SM_b20502 0.59 +0.5
523,776 - SM_b20502 0.60 +0.8
524,165 + -2.1
524,166 - -0.2
524,177 + +0.7
524,177 + -0.2
524,557 - SM_b20503 0.23 +0.2
524,733 - SM_b20503 0.35 -0.7
524,763 - SM_b20503 0.37 -0.8
524,965 + SM_b20503 0.50 +0.4
525,077 + SM_b20503 0.57 +0.7
525,078 - SM_b20503 0.57 -0.7
525,078 - SM_b20503 0.57 +0.2
525,078 - SM_b20503 0.57 -1.4
525,142 - SM_b20503 0.61 -1.4
525,142 - SM_b20503 0.61 +0.7
525,144 + SM_b20503 0.62 -0.3
525,144 + SM_b20503 0.62 -1.7
525,145 - SM_b20503 0.62 +0.5
525,146 + SM_b20503 0.62 -2.1
525,146 + SM_b20503 0.62 -0.2
525,146 + SM_b20503 0.62 +0.8
525,146 + SM_b20503 0.62 -0.2
525,146 + SM_b20503 0.62 +0.8
525,146 + SM_b20503 0.62 +0.0
525,146 + SM_b20503 0.62 -0.3
525,147 - SM_b20503 0.62 -1.9
525,147 - SM_b20503 0.62 -1.2
525,147 - SM_b20503 0.62 -0.4
525,147 - SM_b20503 0.62 -0.2
525,147 - SM_b20503 0.62 +0.1
525,386 + SM_b20503 0.77 -0.4
525,387 - SM_b20503 0.77 +0.1
525,661 + -0.1
525,661 + -1.0
525,803 - -0.3
525,822 - +0.2
525,838 + -1.7
525,999 - SM_b20504 0.20 -2.3
525,999 - SM_b20504 0.20 -2.3
526,000 + SM_b20504 0.20 -0.5
526,000 + SM_b20504 0.20 -0.9
526,001 - SM_b20504 0.20 +0.5
526,065 + SM_b20504 0.26 +0.1
526,068 - SM_b20504 0.27 +0.9
526,068 - SM_b20504 0.27 -1.5
526,068 - SM_b20504 0.27 +0.1
526,213 + SM_b20504 0.41 -0.1
526,213 + SM_b20504 0.41 +0.2
526,213 + SM_b20504 0.41 -0.0
526,214 - SM_b20504 0.41 +0.7
526,214 - SM_b20504 0.41 +0.9
526,349 - SM_b20504 0.55 -0.5
526,393 + SM_b20504 0.59 -1.0
526,393 + SM_b20504 0.59 +1.1
526,393 + SM_b20504 0.59 -1.2
526,393 + SM_b20504 0.59 +0.0
526,393 + SM_b20504 0.59 -0.0
526,393 + SM_b20504 0.59 -0.3
526,393 + SM_b20504 0.59 -0.6
526,393 + SM_b20504 0.59 +0.4
526,394 - SM_b20504 0.59 +0.4
526,394 - SM_b20504 0.59 -1.2
526,394 - SM_b20504 0.59 -0.9
526,394 - SM_b20504 0.59 +0.9
526,394 - SM_b20504 0.59 -0.3
526,397 + SM_b20504 0.59 -0.0
526,397 + SM_b20504 0.59 +1.1
526,426 + SM_b20504 0.62 -0.6
526,427 - SM_b20504 0.62 +0.1
526,432 - SM_b20504 0.63 +0.1
526,603 + SM_b20504 0.80 -0.5
526,622 - SM_b20504 0.82 +0.7
526,622 - SM_b20504 0.82 -0.6
526,685 - SM_b20504 0.88 -1.0
526,718 - +0.2

Or see this region's nucleotide sequence