Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20501 and SM_b20502 are separated by 1 nucleotides SM_b20502 and SM_b20503 are separated by 19 nucleotides
SM_b20501: SM_b20501 - transcriptional regulator, at 522,179 to 523,183
_b20501
SM_b20502: SM_b20502 - sugar ABC transporter permease, at 523,185 to 524,177
_b20502
SM_b20503: SM_b20503 - sugar ABC transporter ATP-binding protein, at 524,197 to 525,735
_b20503
Position (kb) 523
524
525 Strain fitness (log2 ratio) -2
-1
0
1 at 522.279 kb on - strand at 522.492 kb on + strand, within SM_b20501 at 522.492 kb on + strand, within SM_b20501 at 522.493 kb on - strand, within SM_b20501 at 522.697 kb on + strand, within SM_b20501 at 522.697 kb on + strand, within SM_b20501 at 522.699 kb on + strand, within SM_b20501 at 522.699 kb on + strand, within SM_b20501 at 522.700 kb on - strand, within SM_b20501 at 522.700 kb on - strand, within SM_b20501 at 522.700 kb on - strand, within SM_b20501 at 522.785 kb on + strand, within SM_b20501 at 522.811 kb on + strand, within SM_b20501 at 522.814 kb on + strand, within SM_b20501 at 522.814 kb on + strand, within SM_b20501 at 522.814 kb on + strand, within SM_b20501 at 522.815 kb on - strand, within SM_b20501 at 522.841 kb on + strand, within SM_b20501 at 522.842 kb on - strand, within SM_b20501 at 522.842 kb on - strand, within SM_b20501 at 523.239 kb on + strand at 523.239 kb on + strand at 523.240 kb on - strand at 523.256 kb on + strand at 523.257 kb on - strand at 523.257 kb on - strand at 523.268 kb on - strand at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.454 kb on - strand, within SM_b20502 at 523.454 kb on - strand, within SM_b20502 at 523.454 kb on - strand, within SM_b20502 at 523.454 kb on - strand, within SM_b20502 at 523.454 kb on - strand, within SM_b20502 at 523.565 kb on - strand, within SM_b20502 at 523.645 kb on + strand, within SM_b20502 at 523.646 kb on - strand, within SM_b20502 at 523.665 kb on - strand, within SM_b20502 at 523.775 kb on + strand, within SM_b20502 at 523.775 kb on + strand, within SM_b20502 at 523.775 kb on + strand, within SM_b20502 at 523.776 kb on - strand, within SM_b20502 at 524.165 kb on + strand at 524.166 kb on - strand at 524.177 kb on + strand at 524.177 kb on + strand at 524.557 kb on - strand, within SM_b20503 at 524.733 kb on - strand, within SM_b20503 at 524.763 kb on - strand, within SM_b20503 at 524.965 kb on + strand, within SM_b20503 at 525.077 kb on + strand, within SM_b20503 at 525.078 kb on - strand, within SM_b20503 at 525.078 kb on - strand, within SM_b20503 at 525.078 kb on - strand, within SM_b20503 at 525.142 kb on - strand, within SM_b20503 at 525.142 kb on - strand, within SM_b20503 at 525.144 kb on + strand, within SM_b20503 at 525.144 kb on + strand, within SM_b20503 at 525.145 kb on - strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 522,279 - -0.8 522,492 + SM_b20501 0.31 -0.3 522,492 + SM_b20501 0.31 +0.8 522,493 - SM_b20501 0.31 -0.3 522,697 + SM_b20501 0.52 +0.3 522,697 + SM_b20501 0.52 -0.1 522,699 + SM_b20501 0.52 -0.0 522,699 + SM_b20501 0.52 -0.4 522,700 - SM_b20501 0.52 +0.1 522,700 - SM_b20501 0.52 +0.2 522,700 - SM_b20501 0.52 +0.5 522,785 + SM_b20501 0.60 -0.4 522,811 + SM_b20501 0.63 +0.5 522,814 + SM_b20501 0.63 +0.5 522,814 + SM_b20501 0.63 +0.4 522,814 + SM_b20501 0.63 +0.2 522,815 - SM_b20501 0.63 +0.0 522,841 + SM_b20501 0.66 +0.4 522,842 - SM_b20501 0.66 -0.4 522,842 - SM_b20501 0.66 -0.0 523,239 + +0.3 523,239 + -0.4 523,240 - -0.6 523,256 + -0.2 523,257 - +1.0 523,257 - -0.4 523,268 - -0.4 523,453 + SM_b20502 0.27 -0.2 523,453 + SM_b20502 0.27 -1.5 523,453 + SM_b20502 0.27 -0.2 523,453 + SM_b20502 0.27 +0.3 523,453 + SM_b20502 0.27 +1.3 523,453 + SM_b20502 0.27 -0.1 523,453 + SM_b20502 0.27 +0.6 523,454 - SM_b20502 0.27 +0.1 523,454 - SM_b20502 0.27 -0.7 523,454 - SM_b20502 0.27 -0.2 523,454 - SM_b20502 0.27 -0.3 523,454 - SM_b20502 0.27 +1.4 523,565 - SM_b20502 0.38 +0.7 523,645 + SM_b20502 0.46 +0.4 523,646 - SM_b20502 0.46 -1.7 523,665 - SM_b20502 0.48 -1.4 523,775 + SM_b20502 0.59 +0.5 523,775 + SM_b20502 0.59 -0.2 523,775 + SM_b20502 0.59 +0.5 523,776 - SM_b20502 0.60 +0.8 524,165 + -2.1 524,166 - -0.2 524,177 + +0.7 524,177 + -0.2 524,557 - SM_b20503 0.23 +0.2 524,733 - SM_b20503 0.35 -0.7 524,763 - SM_b20503 0.37 -0.8 524,965 + SM_b20503 0.50 +0.4 525,077 + SM_b20503 0.57 +0.7 525,078 - SM_b20503 0.57 -0.7 525,078 - SM_b20503 0.57 +0.2 525,078 - SM_b20503 0.57 -1.4 525,142 - SM_b20503 0.61 -1.4 525,142 - SM_b20503 0.61 +0.7 525,144 + SM_b20503 0.62 -0.3 525,144 + SM_b20503 0.62 -1.7 525,145 - SM_b20503 0.62 +0.5 525,146 + SM_b20503 0.62 -2.1 525,146 + SM_b20503 0.62 -0.2 525,146 + SM_b20503 0.62 +0.8 525,146 + SM_b20503 0.62 -0.2 525,146 + SM_b20503 0.62 +0.8 525,146 + SM_b20503 0.62 +0.0 525,146 + SM_b20503 0.62 -0.3 525,147 - SM_b20503 0.62 -1.9 525,147 - SM_b20503 0.62 -1.2 525,147 - SM_b20503 0.62 -0.4 525,147 - SM_b20503 0.62 -0.2 525,147 - SM_b20503 0.62 +0.1
Or see this region's nucleotide sequence