Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20348 and SM_b20349 are separated by 68 nucleotides SM_b20349 and SM_b20350 are separated by 165 nucleotides SM_b20350 and SM_b20351 overlap by 4 nucleotides
SM_b20348: SM_b20348 - hypothetical protein, at 355,568 to 356,395
_b20348
SM_b20349: SM_b20349 - sugar ABC transporter, at 356,464 to 357,405
_b20349
SM_b20350: SM_b20350 - hypothetical protein, at 357,571 to 358,215
_b20350
SM_b20351: SM_b20351 - sugar ABC transporter ATP-binding protein, at 358,212 to 359,762
_b20351
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 355.480 kb on - strand at 355.480 kb on - strand at 355.480 kb on - strand at 355.551 kb on + strand at 355.552 kb on - strand at 355.808 kb on - strand, within SM_b20348 at 355.808 kb on - strand, within SM_b20348 at 355.856 kb on + strand, within SM_b20348 at 355.856 kb on + strand, within SM_b20348 at 355.888 kb on + strand, within SM_b20348 at 355.888 kb on + strand, within SM_b20348 at 355.889 kb on - strand, within SM_b20348 at 355.889 kb on - strand, within SM_b20348 at 355.892 kb on + strand, within SM_b20348 at 355.893 kb on - strand, within SM_b20348 at 356.028 kb on - strand, within SM_b20348 at 356.028 kb on - strand, within SM_b20348 at 356.028 kb on - strand at 356.028 kb on - strand, within SM_b20348 at 356.559 kb on + strand, within SM_b20349 at 356.861 kb on - strand, within SM_b20349 at 356.920 kb on + strand, within SM_b20349 at 356.920 kb on + strand, within SM_b20349 at 356.920 kb on + strand, within SM_b20349 at 356.921 kb on - strand, within SM_b20349 at 356.921 kb on - strand, within SM_b20349 at 356.921 kb on - strand, within SM_b20349 at 357.055 kb on + strand, within SM_b20349 at 357.073 kb on - strand, within SM_b20349 at 357.106 kb on - strand, within SM_b20349 at 357.259 kb on + strand, within SM_b20349 at 357.260 kb on - strand, within SM_b20349 at 357.298 kb on + strand, within SM_b20349 at 357.299 kb on - strand, within SM_b20349 at 357.739 kb on + strand, within SM_b20350 at 357.817 kb on + strand, within SM_b20350 at 357.885 kb on + strand, within SM_b20350 at 357.886 kb on - strand, within SM_b20350 at 357.914 kb on - strand, within SM_b20350 at 358.275 kb on + strand at 358.284 kb on - strand at 358.285 kb on + strand at 358.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 355,480 - -0.8 355,480 - -2.8 355,480 - -1.6 355,551 + +0.1 355,552 - -0.6 355,808 - SM_b20348 0.29 +0.9 355,808 - SM_b20348 0.29 +0.6 355,856 + SM_b20348 0.35 -0.1 355,856 + SM_b20348 0.35 -0.1 355,888 + SM_b20348 0.39 -0.1 355,888 + SM_b20348 0.39 +0.1 355,889 - SM_b20348 0.39 -0.7 355,889 - SM_b20348 0.39 +0.1 355,892 + SM_b20348 0.39 -0.0 355,893 - SM_b20348 0.39 -0.2 356,028 - SM_b20348 0.56 +1.1 356,028 - SM_b20348 0.56 +1.9 356,028 - +1.5 356,028 - SM_b20348 0.56 +0.7 356,559 + SM_b20349 0.10 +0.2 356,861 - SM_b20349 0.42 +1.2 356,920 + SM_b20349 0.48 -0.2 356,920 + SM_b20349 0.48 -1.2 356,920 + SM_b20349 0.48 +0.2 356,921 - SM_b20349 0.49 +0.2 356,921 - SM_b20349 0.49 +0.2 356,921 - SM_b20349 0.49 +0.5 357,055 + SM_b20349 0.63 -0.8 357,073 - SM_b20349 0.65 -0.4 357,106 - SM_b20349 0.68 +0.6 357,259 + SM_b20349 0.84 +1.1 357,260 - SM_b20349 0.85 +0.0 357,298 + SM_b20349 0.89 +0.7 357,299 - SM_b20349 0.89 +0.0 357,739 + SM_b20350 0.26 -0.7 357,817 + SM_b20350 0.38 +0.4 357,885 + SM_b20350 0.49 -0.2 357,886 - SM_b20350 0.49 +0.5 357,914 - SM_b20350 0.53 -0.1 358,275 + +1.3 358,284 - -0.4 358,285 + -0.0 358,286 - +0.7
Or see this region's nucleotide sequence