Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20342 and SM_b20343 are separated by 1 nucleotides SM_b20343 and SM_b20344 are separated by 276 nucleotides
SM_b20342: SM_b20342 - isoquinoline 1-oxidoreductase, at 346,305 to 348,518
_b20342
SM_b20343: SM_b20343 - isoquinoline 1-oxidoreductase, at 348,520 to 348,978
_b20343
SM_b20344: SM_b20344 - transcriptional regulator, at 349,255 to 350,211
_b20344
Position (kb) 348
349 Strain fitness (log2 ratio) -2
-1
0
1
2 at 347.569 kb on + strand, within SM_b20342 at 347.827 kb on + strand, within SM_b20342 at 347.828 kb on - strand at 347.828 kb on - strand, within SM_b20342 at 347.889 kb on - strand, within SM_b20342 at 348.172 kb on + strand, within SM_b20342 at 348.173 kb on - strand, within SM_b20342 at 348.182 kb on + strand, within SM_b20342 at 348.260 kb on + strand, within SM_b20342 at 348.262 kb on + strand, within SM_b20342 at 348.263 kb on - strand, within SM_b20342 at 348.513 kb on + strand at 348.572 kb on + strand, within SM_b20343 at 348.572 kb on + strand, within SM_b20343 at 348.572 kb on + strand, within SM_b20343 at 348.728 kb on - strand, within SM_b20343 at 348.833 kb on + strand, within SM_b20343 at 348.833 kb on + strand, within SM_b20343 at 348.940 kb on + strand at 348.941 kb on - strand at 348.966 kb on + strand at 348.966 kb on + strand at 349.127 kb on + strand at 349.128 kb on - strand at 349.153 kb on + strand at 349.154 kb on - strand at 349.154 kb on - strand at 349.177 kb on - strand at 349.196 kb on + strand at 349.197 kb on - strand at 349.207 kb on - strand at 349.521 kb on + strand, within SM_b20344 at 349.583 kb on - strand, within SM_b20344 at 349.583 kb on - strand, within SM_b20344 at 349.583 kb on - strand, within SM_b20344 at 349.689 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.823 kb on - strand, within SM_b20344 at 349.887 kb on - strand, within SM_b20344 at 349.887 kb on - strand, within SM_b20344 at 349.887 kb on - strand, within SM_b20344 at 349.968 kb on - strand, within SM_b20344
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 347,569 + SM_b20342 0.57 +0.0 347,827 + SM_b20342 0.69 +0.1 347,828 - -0.7 347,828 - SM_b20342 0.69 -1.5 347,889 - SM_b20342 0.72 +1.2 348,172 + SM_b20342 0.84 -1.2 348,173 - SM_b20342 0.84 -0.4 348,182 + SM_b20342 0.85 -0.2 348,260 + SM_b20342 0.88 -0.7 348,262 + SM_b20342 0.88 +0.6 348,263 - SM_b20342 0.88 -1.5 348,513 + +0.0 348,572 + SM_b20343 0.11 +1.0 348,572 + SM_b20343 0.11 -0.1 348,572 + SM_b20343 0.11 -0.1 348,728 - SM_b20343 0.45 -0.3 348,833 + SM_b20343 0.68 +0.6 348,833 + SM_b20343 0.68 +2.1 348,940 + +0.4 348,941 - -0.1 348,966 + -0.3 348,966 + -0.7 349,127 + -0.3 349,128 - -0.4 349,153 + +1.1 349,154 - -2.2 349,154 - -0.6 349,177 - -0.2 349,196 + +0.2 349,197 - -0.3 349,207 - +0.0 349,521 + SM_b20344 0.28 +0.6 349,583 - SM_b20344 0.34 -0.5 349,583 - SM_b20344 0.34 -1.5 349,583 - SM_b20344 0.34 +1.0 349,689 + SM_b20344 0.45 -0.2 349,822 + SM_b20344 0.59 +0.5 349,822 + SM_b20344 0.59 +0.2 349,822 + SM_b20344 0.59 +0.6 349,822 + SM_b20344 0.59 +0.6 349,823 - SM_b20344 0.59 -1.7 349,887 - SM_b20344 0.66 -0.8 349,887 - SM_b20344 0.66 -0.4 349,887 - SM_b20344 0.66 -0.4 349,968 - SM_b20344 0.75 -0.0
Or see this region's nucleotide sequence