Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20316 and SM_b20317 are separated by 117 nucleotides SM_b20317 and SM_b20318 are separated by 1 nucleotides
SM_b20316: SM_b20316 - sugar ABC transporter substrate-binding protein, at 317,829 to 318,830
_b20316
SM_b20317: SM_b20317 - sugar ABC transporter ATP-binding protein, at 318,948 to 320,498
_b20317
SM_b20318: SM_b20318 - sugar ABC transporter permease, at 320,500 to 321,531
_b20318
Position (kb) 318
319
320
321 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 317.986 kb on - strand, within SM_b20316 at 318.212 kb on + strand, within SM_b20316 at 318.430 kb on - strand, within SM_b20316 at 318.591 kb on + strand, within SM_b20316 at 318.610 kb on + strand, within SM_b20316 at 318.649 kb on - strand, within SM_b20316 at 318.691 kb on - strand, within SM_b20316 at 318.727 kb on - strand, within SM_b20316 at 318.800 kb on + strand at 318.801 kb on - strand at 318.801 kb on - strand at 318.810 kb on + strand at 318.810 kb on + strand at 318.811 kb on - strand at 318.929 kb on + strand at 319.067 kb on + strand at 319.071 kb on + strand at 319.071 kb on + strand at 319.112 kb on + strand, within SM_b20317 at 319.113 kb on - strand, within SM_b20317 at 319.157 kb on + strand, within SM_b20317 at 319.157 kb on + strand, within SM_b20317 at 319.159 kb on - strand, within SM_b20317 at 319.227 kb on + strand, within SM_b20317 at 319.746 kb on - strand, within SM_b20317 at 319.834 kb on + strand, within SM_b20317 at 320.296 kb on + strand, within SM_b20317 at 320.297 kb on - strand, within SM_b20317 at 320.402 kb on + strand at 320.497 kb on - strand at 320.497 kb on - strand at 320.595 kb on + strand at 320.595 kb on + strand at 320.596 kb on - strand at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.785 kb on + strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.812 kb on + strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.873 kb on + strand, within SM_b20318 at 321.083 kb on - strand, within SM_b20318 at 321.121 kb on + strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand at 321.154 kb on - strand, within SM_b20318 at 321.158 kb on - strand, within SM_b20318 at 321.235 kb on + strand, within SM_b20318 at 321.264 kb on + strand, within SM_b20318 at 321.265 kb on - strand, within SM_b20318
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 317,986 - SM_b20316 0.16 +0.4 318,212 + SM_b20316 0.38 -1.5 318,430 - SM_b20316 0.60 -0.1 318,591 + SM_b20316 0.76 -0.4 318,610 + SM_b20316 0.78 +1.0 318,649 - SM_b20316 0.82 -0.2 318,691 - SM_b20316 0.86 +0.1 318,727 - SM_b20316 0.90 -0.7 318,800 + +0.2 318,801 - +0.6 318,801 - -0.1 318,810 + -0.3 318,810 + -0.8 318,811 - -0.0 318,929 + +0.2 319,067 + +0.4 319,071 + -0.4 319,071 + +0.1 319,112 + SM_b20317 0.11 -0.7 319,113 - SM_b20317 0.11 -0.3 319,157 + SM_b20317 0.13 +0.3 319,157 + SM_b20317 0.13 -0.4 319,159 - SM_b20317 0.14 -0.4 319,227 + SM_b20317 0.18 -3.2 319,746 - SM_b20317 0.51 -0.2 319,834 + SM_b20317 0.57 -0.0 320,296 + SM_b20317 0.87 -0.4 320,297 - SM_b20317 0.87 -1.1 320,402 + -0.1 320,497 - +0.4 320,497 - +1.2 320,595 + +0.1 320,595 + +0.9 320,596 - +0.3 320,753 + SM_b20318 0.25 +0.1 320,753 + SM_b20318 0.25 +1.4 320,753 + SM_b20318 0.25 -0.4 320,753 + SM_b20318 0.25 +0.3 320,785 + SM_b20318 0.28 -0.6 320,786 - SM_b20318 0.28 +0.1 320,786 - SM_b20318 0.28 +0.7 320,786 - SM_b20318 0.28 -0.0 320,812 + SM_b20318 0.30 -0.4 320,813 - SM_b20318 0.30 +0.1 320,813 - SM_b20318 0.30 -0.6 320,873 + SM_b20318 0.36 -0.2 321,083 - SM_b20318 0.56 -0.3 321,121 + SM_b20318 0.60 -0.2 321,122 - SM_b20318 0.60 +0.3 321,122 - SM_b20318 0.60 -0.8 321,122 - SM_b20318 0.60 -1.1 321,122 - SM_b20318 0.60 -0.3 321,123 + SM_b20318 0.60 -0.4 321,123 + SM_b20318 0.60 -0.2 321,123 + +0.9 321,154 - SM_b20318 0.63 -2.0 321,158 - SM_b20318 0.64 -1.2 321,235 + SM_b20318 0.71 -0.1 321,264 + SM_b20318 0.74 -2.4 321,265 - SM_b20318 0.74 +0.5
Or see this region's nucleotide sequence