Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20229 and SM_b20230 are separated by 231 nucleotides SM_b20230 and SM_b20231 are separated by 59 nucleotides
SM_b20229: SM_b20229 - nutrient deprivation-induced protein, at 233,826 to 234,800
_b20229
SM_b20230: SM_b20230 - smc22-r protein, at 235,032 to 236,036
_b20230
SM_b20231: SM_b20231 - sugar ABC transporter substrate-binding protein, at 236,096 to 237,451
_b20231
Position (kb) 235
236
237 Strain fitness (log2 ratio) -1
0
1
2 at 234.130 kb on - strand, within SM_b20229 at 234.130 kb on - strand, within SM_b20229 at 234.198 kb on + strand, within SM_b20229 at 234.298 kb on - strand, within SM_b20229 at 234.298 kb on - strand, within SM_b20229 at 234.308 kb on + strand, within SM_b20229 at 234.309 kb on - strand, within SM_b20229 at 234.309 kb on - strand, within SM_b20229 at 234.338 kb on + strand, within SM_b20229 at 234.339 kb on - strand, within SM_b20229 at 234.593 kb on - strand, within SM_b20229 at 235.069 kb on + strand at 235.070 kb on - strand at 235.130 kb on + strand at 235.130 kb on + strand at 235.131 kb on - strand at 235.164 kb on + strand, within SM_b20230 at 235.165 kb on - strand, within SM_b20230 at 235.168 kb on + strand, within SM_b20230 at 235.252 kb on - strand, within SM_b20230 at 235.264 kb on + strand, within SM_b20230 at 235.306 kb on + strand, within SM_b20230 at 235.307 kb on - strand, within SM_b20230 at 235.307 kb on - strand, within SM_b20230 at 235.352 kb on + strand, within SM_b20230 at 235.376 kb on - strand, within SM_b20230 at 235.376 kb on - strand, within SM_b20230 at 235.450 kb on + strand, within SM_b20230 at 235.450 kb on + strand, within SM_b20230 at 235.450 kb on + strand, within SM_b20230 at 235.451 kb on - strand, within SM_b20230 at 235.451 kb on - strand, within SM_b20230 at 235.531 kb on - strand, within SM_b20230 at 235.545 kb on + strand, within SM_b20230 at 235.692 kb on + strand, within SM_b20230 at 235.692 kb on + strand, within SM_b20230 at 235.692 kb on + strand, within SM_b20230 at 235.693 kb on - strand, within SM_b20230 at 235.693 kb on - strand, within SM_b20230 at 235.693 kb on - strand, within SM_b20230 at 235.698 kb on - strand, within SM_b20230 at 235.754 kb on - strand, within SM_b20230 at 235.754 kb on - strand, within SM_b20230 at 235.881 kb on + strand, within SM_b20230 at 236.074 kb on - strand at 236.199 kb on - strand at 236.255 kb on + strand, within SM_b20231 at 236.256 kb on - strand, within SM_b20231 at 236.369 kb on + strand, within SM_b20231 at 236.370 kb on - strand, within SM_b20231 at 236.370 kb on - strand, within SM_b20231 at 236.371 kb on + strand, within SM_b20231 at 236.371 kb on + strand, within SM_b20231 at 236.424 kb on + strand, within SM_b20231 at 236.424 kb on + strand, within SM_b20231 at 236.425 kb on - strand, within SM_b20231 at 236.425 kb on - strand, within SM_b20231 at 236.425 kb on - strand, within SM_b20231 at 236.425 kb on - strand, within SM_b20231 at 236.456 kb on + strand, within SM_b20231 at 236.459 kb on + strand, within SM_b20231 at 236.459 kb on + strand, within SM_b20231 at 236.459 kb on + strand, within SM_b20231 at 236.459 kb on + strand, within SM_b20231 at 236.459 kb on + strand, within SM_b20231 at 236.459 kb on + strand, within SM_b20231 at 236.459 kb on + strand, within SM_b20231 at 236.460 kb on - strand, within SM_b20231 at 236.461 kb on + strand, within SM_b20231 at 236.461 kb on + strand, within SM_b20231 at 236.600 kb on + strand, within SM_b20231 at 236.601 kb on - strand, within SM_b20231 at 236.738 kb on + strand, within SM_b20231 at 236.939 kb on + strand, within SM_b20231
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 234,130 - SM_b20229 0.31 +0.2 234,130 - SM_b20229 0.31 -1.5 234,198 + SM_b20229 0.38 -0.2 234,298 - SM_b20229 0.48 +1.2 234,298 - SM_b20229 0.48 -0.7 234,308 + SM_b20229 0.49 -1.3 234,309 - SM_b20229 0.50 -1.2 234,309 - SM_b20229 0.50 -0.4 234,338 + SM_b20229 0.53 -0.1 234,339 - SM_b20229 0.53 -0.5 234,593 - SM_b20229 0.79 -0.0 235,069 + -1.3 235,070 - -0.9 235,130 + +0.4 235,130 + -0.8 235,131 - +1.9 235,164 + SM_b20230 0.13 +0.4 235,165 - SM_b20230 0.13 +0.0 235,168 + SM_b20230 0.14 +0.5 235,252 - SM_b20230 0.22 +0.4 235,264 + SM_b20230 0.23 +0.2 235,306 + SM_b20230 0.27 -0.1 235,307 - SM_b20230 0.27 +0.9 235,307 - SM_b20230 0.27 +0.8 235,352 + SM_b20230 0.32 +0.2 235,376 - SM_b20230 0.34 +0.1 235,376 - SM_b20230 0.34 -0.6 235,450 + SM_b20230 0.42 -0.1 235,450 + SM_b20230 0.42 -0.2 235,450 + SM_b20230 0.42 -0.1 235,451 - SM_b20230 0.42 +0.2 235,451 - SM_b20230 0.42 +0.1 235,531 - SM_b20230 0.50 +0.5 235,545 + SM_b20230 0.51 +1.5 235,692 + SM_b20230 0.66 +0.1 235,692 + SM_b20230 0.66 +0.4 235,692 + SM_b20230 0.66 +1.9 235,693 - SM_b20230 0.66 -0.4 235,693 - SM_b20230 0.66 -0.3 235,693 - SM_b20230 0.66 -0.2 235,698 - SM_b20230 0.66 -1.3 235,754 - SM_b20230 0.72 +0.8 235,754 - SM_b20230 0.72 +0.0 235,881 + SM_b20230 0.84 -0.2 236,074 - -1.0 236,199 - +0.1 236,255 + SM_b20231 0.12 +0.9 236,256 - SM_b20231 0.12 -0.2 236,369 + SM_b20231 0.20 -0.1 236,370 - SM_b20231 0.20 -0.8 236,370 - SM_b20231 0.20 +0.4 236,371 + SM_b20231 0.20 -0.1 236,371 + SM_b20231 0.20 +1.4 236,424 + SM_b20231 0.24 -0.1 236,424 + SM_b20231 0.24 +0.2 236,425 - SM_b20231 0.24 +0.6 236,425 - SM_b20231 0.24 +0.1 236,425 - SM_b20231 0.24 +0.4 236,425 - SM_b20231 0.24 +0.9 236,456 + SM_b20231 0.27 -0.2 236,459 + SM_b20231 0.27 -0.0 236,459 + SM_b20231 0.27 -0.2 236,459 + SM_b20231 0.27 +0.8 236,459 + SM_b20231 0.27 -0.1 236,459 + SM_b20231 0.27 -0.5 236,459 + SM_b20231 0.27 -0.9 236,459 + SM_b20231 0.27 +0.2 236,460 - SM_b20231 0.27 -0.9 236,461 + SM_b20231 0.27 +0.2 236,461 + SM_b20231 0.27 -0.0 236,600 + SM_b20231 0.37 +0.2 236,601 - SM_b20231 0.37 -0.1 236,738 + SM_b20231 0.47 -0.4 236,939 + SM_b20231 0.62 +0.7
Or see this region's nucleotide sequence