Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20208 and SM_b20209 are separated by 68 nucleotides SM_b20209 and SM_b20210 are separated by 54 nucleotides SM_b20210 and SM_b20211 are separated by 141 nucleotides
SM_b20208: SM_b20208 - pyrroloquinoline quinone biosynthesis protein PqqE, at 215,797 to 216,924
_b20208
SM_b20209: SM_b20209 - hypothetical protein, at 216,993 to 217,232
_b20209
SM_b20210: SM_b20210 - oxidoreductase, at 217,287 to 218,000
_b20210
SM_b20211: SM_b20211 - transcriptional regulator, at 218,142 to 219,074
_b20211
Position (kb) 216
217
218 Strain fitness (log2 ratio) -1
0
1 at 216.088 kb on + strand, within SM_b20208 at 216.232 kb on + strand, within SM_b20208 at 216.276 kb on + strand, within SM_b20208 at 216.425 kb on + strand, within SM_b20208 at 216.425 kb on + strand, within SM_b20208 at 216.426 kb on - strand, within SM_b20208 at 216.498 kb on - strand, within SM_b20208 at 216.512 kb on - strand, within SM_b20208 at 216.538 kb on + strand, within SM_b20208 at 217.061 kb on + strand, within SM_b20209 at 217.090 kb on + strand, within SM_b20209 at 217.090 kb on + strand, within SM_b20209 at 217.215 kb on + strand at 217.215 kb on + strand at 217.216 kb on - strand at 217.227 kb on - strand at 217.279 kb on + strand at 217.279 kb on + strand at 217.279 kb on + strand at 217.465 kb on - strand, within SM_b20210 at 217.623 kb on - strand, within SM_b20210 at 217.860 kb on + strand, within SM_b20210
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 216,088 + SM_b20208 0.26 -0.7 216,232 + SM_b20208 0.39 -0.0 216,276 + SM_b20208 0.42 -0.2 216,425 + SM_b20208 0.56 +0.4 216,425 + SM_b20208 0.56 +0.5 216,426 - SM_b20208 0.56 -0.2 216,498 - SM_b20208 0.62 -0.2 216,512 - SM_b20208 0.63 -0.2 216,538 + SM_b20208 0.66 -0.4 217,061 + SM_b20209 0.28 -0.1 217,090 + SM_b20209 0.40 -0.6 217,090 + SM_b20209 0.40 -0.8 217,215 + -0.0 217,215 + -0.5 217,216 - -0.1 217,227 - -0.2 217,279 + -0.5 217,279 + +0.1 217,279 + +0.1 217,465 - SM_b20210 0.25 -0.3 217,623 - SM_b20210 0.47 +0.5 217,860 + SM_b20210 0.80 +0.4
Or see this region's nucleotide sequence