Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20154

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20153 and SM_b20154 are separated by 50 nucleotidesSM_b20154 and SM_b20155 are separated by 510 nucleotides SM_b20153: SM_b20153 - hypothetical protein, at 169,058 to 170,701 _b20153 SM_b20154: SM_b20154 - transcriptional regulator, at 170,752 to 171,738 _b20154 SM_b20155: SM_b20155 - ABC transporter permease, at 172,249 to 174,099 _b20155 Position (kb) 170 171 172Strain fitness (log2 ratio) -1 0 1 2 3at 169.838 kb on + strand, within SM_b20153at 169.838 kb on + strand, within SM_b20153at 169.839 kb on - strand, within SM_b20153at 169.860 kb on + strand, within SM_b20153at 169.860 kb on + strand, within SM_b20153at 169.861 kb on - strand, within SM_b20153at 169.861 kb on - strand, within SM_b20153at 169.861 kb on - strand, within SM_b20153at 169.861 kb on - strand, within SM_b20153at 170.012 kb on + strand, within SM_b20153at 170.012 kb on + strand, within SM_b20153at 170.012 kb on + strand, within SM_b20153at 170.159 kb on - strand, within SM_b20153at 170.210 kb on + strand, within SM_b20153at 170.210 kb on + strand, within SM_b20153at 170.211 kb on - strand, within SM_b20153at 170.211 kb on - strand, within SM_b20153at 170.211 kb on - strand, within SM_b20153at 170.236 kb on + strand, within SM_b20153at 170.236 kb on + strand, within SM_b20153at 170.274 kb on + strand, within SM_b20153at 170.274 kb on + strand, within SM_b20153at 170.275 kb on - strand, within SM_b20153at 170.275 kb on - strand, within SM_b20153at 170.279 kb on + strand, within SM_b20153at 170.279 kb on + strand, within SM_b20153at 170.280 kb on - strand, within SM_b20153at 170.300 kb on - strand, within SM_b20153at 170.395 kb on - strand, within SM_b20153at 170.716 kb on - strandat 170.753 kb on + strandat 170.753 kb on + strandat 170.754 kb on - strandat 170.754 kb on - strandat 170.754 kb on - strandat 170.754 kb on - strandat 170.886 kb on - strand, within SM_b20154at 171.071 kb on + strand, within SM_b20154at 171.071 kb on + strand, within SM_b20154at 171.270 kb on + strand, within SM_b20154at 171.416 kb on - strand, within SM_b20154at 171.416 kb on - strand, within SM_b20154at 171.616 kb on + strand, within SM_b20154at 171.616 kb on + strand, within SM_b20154at 171.616 kb on + strand, within SM_b20154at 171.617 kb on - strand, within SM_b20154at 171.770 kb on - strandat 172.004 kb on + strandat 172.005 kb on - strandat 172.163 kb on + strandat 172.163 kb on + strandat 172.163 kb on + strandat 172.164 kb on - strandat 172.223 kb on - strandat 172.223 kb on - strandat 172.223 kb on - strandat 172.223 kb on - strandat 172.229 kb on - strandat 172.229 kb on - strandat 172.248 kb on - strandat 172.399 kb on + strandat 172.400 kb on - strandat 172.504 kb on + strand, within SM_b20155at 172.634 kb on + strand, within SM_b20155at 172.635 kb on - strand, within SM_b20155at 172.691 kb on - strand, within SM_b20155at 172.691 kb on - strand, within SM_b20155

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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169,838 + SM_b20153 0.47 +0.0
169,838 + SM_b20153 0.47 -0.0
169,839 - SM_b20153 0.48 -0.5
169,860 + SM_b20153 0.49 -0.0
169,860 + SM_b20153 0.49 -1.0
169,861 - SM_b20153 0.49 +0.7
169,861 - SM_b20153 0.49 +1.1
169,861 - SM_b20153 0.49 +0.0
169,861 - SM_b20153 0.49 -1.0
170,012 + SM_b20153 0.58 -0.0
170,012 + SM_b20153 0.58 +2.8
170,012 + SM_b20153 0.58 -0.3
170,159 - SM_b20153 0.67 -0.1
170,210 + SM_b20153 0.70 -0.2
170,210 + SM_b20153 0.70 +0.4
170,211 - SM_b20153 0.70 +1.6
170,211 - SM_b20153 0.70 -0.1
170,211 - SM_b20153 0.70 +0.8
170,236 + SM_b20153 0.72 +0.1
170,236 + SM_b20153 0.72 +0.1
170,274 + SM_b20153 0.74 -0.1
170,274 + SM_b20153 0.74 -0.4
170,275 - SM_b20153 0.74 -0.6
170,275 - SM_b20153 0.74 -0.2
170,279 + SM_b20153 0.74 +0.3
170,279 + SM_b20153 0.74 -0.2
170,280 - SM_b20153 0.74 -0.0
170,300 - SM_b20153 0.76 -1.0
170,395 - SM_b20153 0.81 +0.0
170,716 - +0.0
170,753 + -0.1
170,753 + -0.2
170,754 - -0.1
170,754 - -0.8
170,754 - +1.7
170,754 - +0.2
170,886 - SM_b20154 0.14 +0.4
171,071 + SM_b20154 0.32 +1.6
171,071 + SM_b20154 0.32 +0.7
171,270 + SM_b20154 0.52 -0.0
171,416 - SM_b20154 0.67 +0.2
171,416 - SM_b20154 0.67 +1.0
171,616 + SM_b20154 0.88 +0.4
171,616 + SM_b20154 0.88 -0.1
171,616 + SM_b20154 0.88 +0.4
171,617 - SM_b20154 0.88 +0.3
171,770 - +0.1
172,004 + +0.2
172,005 - -1.1
172,163 + +0.0
172,163 + +0.1
172,163 + -0.3
172,164 - -0.6
172,223 - -1.0
172,223 - -1.5
172,223 - +0.1
172,223 - -0.1
172,229 - -1.2
172,229 - +0.6
172,248 - -0.2
172,399 + +0.7
172,400 - -1.2
172,504 + SM_b20155 0.14 -0.7
172,634 + SM_b20155 0.21 -0.0
172,635 - SM_b20155 0.21 -0.4
172,691 - SM_b20155 0.24 +0.0
172,691 - SM_b20155 0.24 -0.8

Or see this region's nucleotide sequence