Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20139

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20138 and SM_b20139 are separated by 311 nucleotidesSM_b20139 and SM_b20140 are separated by 19 nucleotidesSM_b20140 and SM_b20141 overlap by 1 nucleotides SM_b20138: SM_b20138 - hypothetical protein, at 152,176 to 153,102 _b20138 SM_b20139: SM_b20139 - hypothetical protein, at 153,414 to 153,908 _b20139 SM_b20140: SM_b20140 - dihydrodipicolinate synthase, at 153,928 to 154,809 _b20140 SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455 _b20141 Position (kb) 153 154Strain fitness (log2 ratio) -2 -1 0 1 2at 152.478 kb on - strand, within SM_b20138at 152.478 kb on - strand, within SM_b20138at 152.523 kb on - strand, within SM_b20138at 152.616 kb on - strand, within SM_b20138at 152.616 kb on - strand, within SM_b20138at 152.711 kb on + strand, within SM_b20138at 152.754 kb on - strand, within SM_b20138at 152.802 kb on - strand, within SM_b20138at 152.802 kb on - strand, within SM_b20138at 152.813 kb on + strandat 152.876 kb on + strand, within SM_b20138at 152.876 kb on + strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.924 kb on + strand, within SM_b20138at 152.925 kb on - strand, within SM_b20138at 152.925 kb on - strand, within SM_b20138at 152.925 kb on - strand, within SM_b20138at 152.990 kb on + strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.993 kb on + strand, within SM_b20138at 152.994 kb on - strand, within SM_b20138at 152.994 kb on - strand, within SM_b20138at 152.994 kb on - strand, within SM_b20138at 153.087 kb on + strandat 153.258 kb on + strandat 153.268 kb on + strandat 153.268 kb on + strandat 153.271 kb on + strandat 153.272 kb on - strandat 153.290 kb on + strandat 153.290 kb on + strandat 153.291 kb on - strandat 153.587 kb on + strand, within SM_b20139at 153.588 kb on - strand, within SM_b20139at 153.588 kb on - strand, within SM_b20139at 153.588 kb on - strand, within SM_b20139at 153.698 kb on + strand, within SM_b20139at 153.887 kb on + strandat 154.100 kb on + strand, within SM_b20140at 154.101 kb on - strand, within SM_b20140at 154.256 kb on + strand, within SM_b20140at 154.296 kb on - strand, within SM_b20140at 154.344 kb on + strand, within SM_b20140at 154.415 kb on + strand, within SM_b20140at 154.415 kb on + strand, within SM_b20140at 154.415 kb on + strand, within SM_b20140at 154.416 kb on - strand, within SM_b20140at 154.421 kb on + strand, within SM_b20140at 154.422 kb on - strand, within SM_b20140at 154.422 kb on - strand, within SM_b20140at 154.422 kb on - strand, within SM_b20140at 154.698 kb on + strand, within SM_b20140at 154.698 kb on + strand, within SM_b20140at 154.699 kb on - strand, within SM_b20140at 154.699 kb on - strand, within SM_b20140at 154.699 kb on - strand, within SM_b20140at 154.749 kb on - strandat 154.863 kb on + strandat 154.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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152,478 - SM_b20138 0.33 -0.2
152,478 - SM_b20138 0.33 -0.2
152,523 - SM_b20138 0.37 -2.1
152,616 - SM_b20138 0.47 +0.3
152,616 - SM_b20138 0.47 +0.6
152,711 + SM_b20138 0.58 -0.3
152,754 - SM_b20138 0.62 +0.1
152,802 - SM_b20138 0.68 -0.1
152,802 - SM_b20138 0.68 +0.3
152,813 + +1.0
152,876 + SM_b20138 0.76 +0.5
152,876 + SM_b20138 0.76 -0.1
152,877 - SM_b20138 0.76 +0.1
152,877 - SM_b20138 0.76 +1.0
152,877 - SM_b20138 0.76 -0.6
152,877 - SM_b20138 0.76 -0.3
152,924 + SM_b20138 0.81 -0.1
152,925 - SM_b20138 0.81 -0.1
152,925 - SM_b20138 0.81 -0.1
152,925 - SM_b20138 0.81 +0.0
152,990 + SM_b20138 0.88 -1.0
152,991 - SM_b20138 0.88 +0.5
152,991 - SM_b20138 0.88 +1.0
152,991 - SM_b20138 0.88 +0.3
152,991 - SM_b20138 0.88 +0.4
152,993 + SM_b20138 0.88 +0.8
152,994 - SM_b20138 0.88 +0.4
152,994 - SM_b20138 0.88 -0.1
152,994 - SM_b20138 0.88 -1.0
153,087 + +0.2
153,258 + -0.6
153,268 + -0.7
153,268 + +0.1
153,271 + +0.0
153,272 - +1.4
153,290 + +0.1
153,290 + +0.1
153,291 - +0.1
153,587 + SM_b20139 0.35 -0.3
153,588 - SM_b20139 0.35 -1.5
153,588 - SM_b20139 0.35 -1.5
153,588 - SM_b20139 0.35 -0.5
153,698 + SM_b20139 0.57 +0.1
153,887 + -0.8
154,100 + SM_b20140 0.20 -0.3
154,101 - SM_b20140 0.20 -0.0
154,256 + SM_b20140 0.37 -0.4
154,296 - SM_b20140 0.42 +0.5
154,344 + SM_b20140 0.47 -0.2
154,415 + SM_b20140 0.55 -0.3
154,415 + SM_b20140 0.55 -0.5
154,415 + SM_b20140 0.55 -0.1
154,416 - SM_b20140 0.55 -0.4
154,421 + SM_b20140 0.56 -0.2
154,422 - SM_b20140 0.56 -0.3
154,422 - SM_b20140 0.56 +2.5
154,422 - SM_b20140 0.56 -0.1
154,698 + SM_b20140 0.87 +0.3
154,698 + SM_b20140 0.87 -0.0
154,699 - SM_b20140 0.87 +1.0
154,699 - SM_b20140 0.87 -0.5
154,699 - SM_b20140 0.87 +0.2
154,749 - -0.3
154,863 + +0.1
154,864 - -0.2

Or see this region's nucleotide sequence