Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20037 and SM_b20038 are separated by 216 nucleotides SM_b20038 and SM_b20039 are separated by 96 nucleotides
SM_b20037: SM_b20037 - shikimate 5-dehydrogenase, at 47,745 to 48,605
_b20037
SM_b20038: SM_b20038 - hypothetical protein, at 48,822 to 49,049
_b20038
SM_b20039: SM_b20039 - transcriptional regulator, at 49,146 to 50,570
_b20039
Position (kb)
48
49
50 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 47.825 kb on + strand at 47.825 kb on + strand at 47.825 kb on + strand at 47.826 kb on - strand at 47.826 kb on - strand at 47.957 kb on + strand, within SM_b20037 at 47.958 kb on - strand, within SM_b20037 at 47.992 kb on - strand, within SM_b20037 at 47.992 kb on - strand, within SM_b20037 at 48.077 kb on + strand, within SM_b20037 at 48.077 kb on + strand, within SM_b20037 at 48.184 kb on - strand, within SM_b20037 at 48.184 kb on - strand, within SM_b20037 at 48.373 kb on - strand, within SM_b20037 at 48.436 kb on - strand, within SM_b20037 at 48.646 kb on + strand at 48.646 kb on + strand at 48.791 kb on - strand at 48.791 kb on - strand at 48.799 kb on + strand at 48.800 kb on - strand at 48.804 kb on + strand at 48.805 kb on - strand at 48.805 kb on - strand at 48.805 kb on - strand at 49.143 kb on - strand at 49.143 kb on - strand at 49.147 kb on + strand at 49.147 kb on + strand at 49.456 kb on + strand, within SM_b20039 at 49.618 kb on - strand, within SM_b20039 at 49.618 kb on - strand, within SM_b20039 at 49.800 kb on - strand, within SM_b20039 at 49.804 kb on + strand, within SM_b20039 at 49.804 kb on + strand, within SM_b20039 at 49.805 kb on - strand, within SM_b20039 at 49.805 kb on - strand, within SM_b20039 at 49.805 kb on - strand, within SM_b20039 at 49.868 kb on + strand, within SM_b20039 at 49.868 kb on + strand, within SM_b20039 at 49.870 kb on + strand, within SM_b20039 at 49.870 kb on + strand, within SM_b20039 at 49.871 kb on - strand, within SM_b20039 at 49.871 kb on - strand, within SM_b20039 at 49.927 kb on + strand, within SM_b20039 at 49.927 kb on + strand, within SM_b20039 at 49.928 kb on - strand, within SM_b20039 at 50.020 kb on - strand, within SM_b20039 at 50.020 kb on - strand, within SM_b20039
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 47,825 + +0.6 47,825 + -0.8 47,825 + -0.3 47,826 - -3.0 47,826 - -0.6 47,957 + SM_b20037 0.25 -0.3 47,958 - SM_b20037 0.25 +0.1 47,992 - SM_b20037 0.29 +0.0 47,992 - SM_b20037 0.29 +0.7 48,077 + SM_b20037 0.39 -1.0 48,077 + SM_b20037 0.39 +2.4 48,184 - SM_b20037 0.51 +0.6 48,184 - SM_b20037 0.51 +0.4 48,373 - SM_b20037 0.73 -0.3 48,436 - SM_b20037 0.80 +0.1 48,646 + +0.7 48,646 + -0.1 48,791 - +0.2 48,791 - +0.1 48,799 + -0.1 48,800 - -0.3 48,804 + -0.1 48,805 - -0.1 48,805 - -0.5 48,805 - -0.2 49,143 - +0.2 49,143 - +0.1 49,147 + -1.0 49,147 + -0.4 49,456 + SM_b20039 0.22 -0.1 49,618 - SM_b20039 0.33 -0.6 49,618 - SM_b20039 0.33 -0.2 49,800 - SM_b20039 0.46 +2.0 49,804 + SM_b20039 0.46 -0.2 49,804 + SM_b20039 0.46 -0.3 49,805 - SM_b20039 0.46 -0.5 49,805 - SM_b20039 0.46 -0.0 49,805 - SM_b20039 0.46 +2.0 49,868 + SM_b20039 0.51 -0.3 49,868 + SM_b20039 0.51 +0.7 49,870 + SM_b20039 0.51 -0.2 49,870 + SM_b20039 0.51 +0.2 49,871 - SM_b20039 0.51 +0.6 49,871 - SM_b20039 0.51 -0.2 49,927 + SM_b20039 0.55 -0.6 49,927 + SM_b20039 0.55 -0.3 49,928 - SM_b20039 0.55 +0.4 50,020 - SM_b20039 0.61 +1.2 50,020 - SM_b20039 0.61 -0.5
Or see this region's nucleotide sequence