Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20013 and SM_b20014 are separated by 53 nucleotides SM_b20014 and SM_b20015 are separated by 13 nucleotides SM_b20015 and SM_b20016 overlap by 4 nucleotides
SM_b20013: SM_b20013 - hypothetical protein, at 19,079 to 20,323
_b20013
SM_b20014: SM_b20014 - transcriptional regulator, at 20,377 to 21,378
_b20014
SM_b20015: SM_b20015 - sugar ABC transporter permease, at 21,392 to 22,348
_b20015
SM_b20016: SM_b20016 - sugar ABC transporter permease, at 22,345 to 23,337
_b20016
Position (kb) 20
21
22 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 19.382 kb on + strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.423 kb on - strand, within SM_b20013 at 19.423 kb on - strand, within SM_b20013 at 19.470 kb on + strand, within SM_b20013 at 19.471 kb on - strand, within SM_b20013 at 19.569 kb on + strand, within SM_b20013 at 19.612 kb on - strand, within SM_b20013 at 19.911 kb on + strand, within SM_b20013 at 19.912 kb on - strand, within SM_b20013 at 20.068 kb on - strand, within SM_b20013 at 20.209 kb on - strand at 20.269 kb on + strand at 20.382 kb on + strand at 20.382 kb on + strand at 20.383 kb on - strand at 20.383 kb on - strand at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.555 kb on + strand, within SM_b20014 at 20.556 kb on - strand, within SM_b20014 at 20.837 kb on - strand, within SM_b20014 at 20.838 kb on + strand, within SM_b20014 at 20.838 kb on + strand, within SM_b20014 at 20.839 kb on - strand, within SM_b20014 at 20.839 kb on - strand, within SM_b20014 at 21.150 kb on - strand, within SM_b20014 at 21.237 kb on - strand, within SM_b20014 at 21.421 kb on - strand at 21.421 kb on - strand at 21.612 kb on + strand, within SM_b20015 at 21.612 kb on + strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.649 kb on - strand, within SM_b20015 at 21.741 kb on + strand, within SM_b20015 at 21.741 kb on + strand, within SM_b20015 at 21.741 kb on + strand, within SM_b20015 at 21.742 kb on - strand, within SM_b20015 at 21.742 kb on - strand, within SM_b20015 at 21.742 kb on - strand, within SM_b20015 at 21.771 kb on + strand, within SM_b20015 at 21.772 kb on - strand, within SM_b20015 at 21.772 kb on - strand, within SM_b20015 at 22.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 19,382 + SM_b20013 0.24 -1.0 19,383 - SM_b20013 0.24 -0.8 19,383 - SM_b20013 0.24 +0.1 19,383 - SM_b20013 0.24 -0.6 19,383 - SM_b20013 0.24 +0.4 19,423 - SM_b20013 0.28 -0.6 19,423 - SM_b20013 0.28 +1.2 19,470 + SM_b20013 0.31 +0.2 19,471 - SM_b20013 0.31 +0.3 19,569 + SM_b20013 0.39 -0.6 19,612 - SM_b20013 0.43 -0.4 19,911 + SM_b20013 0.67 -0.4 19,912 - SM_b20013 0.67 -0.0 20,068 - SM_b20013 0.79 -4.2 20,209 - -0.2 20,269 + -0.4 20,382 + -0.5 20,382 + +0.2 20,383 - +0.2 20,383 - +0.2 20,537 + SM_b20014 0.16 +1.0 20,537 + SM_b20014 0.16 -0.1 20,537 + SM_b20014 0.16 +0.2 20,537 + SM_b20014 0.16 -0.9 20,555 + SM_b20014 0.18 -0.3 20,556 - SM_b20014 0.18 -0.2 20,837 - SM_b20014 0.46 -0.1 20,838 + SM_b20014 0.46 +0.4 20,838 + SM_b20014 0.46 -0.6 20,839 - SM_b20014 0.46 -0.6 20,839 - SM_b20014 0.46 +0.3 21,150 - SM_b20014 0.77 -0.2 21,237 - SM_b20014 0.86 +0.4 21,421 - -0.1 21,421 - -0.8 21,612 + SM_b20015 0.23 -1.6 21,612 + SM_b20015 0.23 -1.8 21,613 - SM_b20015 0.23 -0.3 21,613 - SM_b20015 0.23 +1.0 21,613 - SM_b20015 0.23 -1.6 21,613 - SM_b20015 0.23 -0.9 21,649 - SM_b20015 0.27 -1.7 21,741 + SM_b20015 0.36 -3.1 21,741 + SM_b20015 0.36 -1.2 21,741 + SM_b20015 0.36 -0.8 21,742 - SM_b20015 0.37 -0.4 21,742 - SM_b20015 0.37 -1.9 21,742 - SM_b20015 0.37 -0.5 21,771 + SM_b20015 0.40 -1.4 21,772 - SM_b20015 0.40 -1.3 21,772 - SM_b20015 0.40 -0.4 22,279 - -0.8
Or see this region's nucleotide sequence