Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22485 and RR42_RS22490 are separated by 304 nucleotides RR42_RS22490 and RR42_RS22495 overlap by 4 nucleotides RR42_RS22495 and RR42_RS22500 are separated by 46 nucleotides
RR42_RS22485: RR42_RS22485 - MBL fold metallo-hydrolase, at 381,634 to 382,593
_RS22485
RR42_RS22490: RR42_RS22490 - IclR family transcriptional regulator, at 382,898 to 383,725
_RS22490
RR42_RS22495: RR42_RS22495 - hypothetical protein, at 383,722 to 384,561
_RS22495
RR42_RS22500: RR42_RS22500 - ABC transporter substrate-binding protein, at 384,608 to 385,597
_RS22500
Position (kb) 382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 382.028 kb on + strand, within RR42_RS22485 at 382.029 kb on - strand, within RR42_RS22485 at 382.029 kb on - strand, within RR42_RS22485 at 382.277 kb on + strand, within RR42_RS22485 at 382.278 kb on - strand, within RR42_RS22485 at 382.322 kb on + strand, within RR42_RS22485 at 382.323 kb on - strand, within RR42_RS22485 at 382.356 kb on - strand, within RR42_RS22485 at 382.373 kb on + strand, within RR42_RS22485 at 382.374 kb on - strand, within RR42_RS22485 at 382.512 kb on - strand at 382.517 kb on + strand at 382.517 kb on + strand at 382.518 kb on - strand at 382.695 kb on + strand at 382.696 kb on - strand at 382.696 kb on - strand at 382.696 kb on - strand at 382.696 kb on - strand at 382.696 kb on - strand at 382.697 kb on + strand at 382.697 kb on + strand at 382.698 kb on - strand at 382.698 kb on - strand at 382.698 kb on - strand at 382.698 kb on - strand at 382.698 kb on - strand at 382.698 kb on - strand at 382.728 kb on + strand at 382.798 kb on - strand at 382.869 kb on + strand at 382.869 kb on + strand at 382.869 kb on + strand at 382.870 kb on - strand at 382.870 kb on - strand at 382.870 kb on - strand at 382.872 kb on + strand at 382.872 kb on + strand at 382.872 kb on + strand at 382.873 kb on - strand at 382.873 kb on - strand at 382.873 kb on - strand at 382.873 kb on - strand at 383.093 kb on + strand, within RR42_RS22490 at 383.093 kb on + strand, within RR42_RS22490 at 383.093 kb on + strand, within RR42_RS22490 at 383.093 kb on + strand, within RR42_RS22490 at 383.093 kb on + strand, within RR42_RS22490 at 383.094 kb on - strand, within RR42_RS22490 at 383.189 kb on + strand, within RR42_RS22490 at 383.189 kb on + strand, within RR42_RS22490 at 383.190 kb on - strand, within RR42_RS22490 at 383.190 kb on - strand, within RR42_RS22490 at 383.310 kb on - strand, within RR42_RS22490 at 383.710 kb on + strand at 384.180 kb on + strand, within RR42_RS22495 at 384.180 kb on + strand, within RR42_RS22495 at 384.328 kb on + strand, within RR42_RS22495 at 384.489 kb on + strand at 384.609 kb on + strand at 384.610 kb on - strand at 384.681 kb on + strand at 384.681 kb on + strand at 384.682 kb on - strand at 384.693 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 382,028 + RR42_RS22485 0.41 -1.9 382,029 - RR42_RS22485 0.41 -0.5 382,029 - RR42_RS22485 0.41 +0.6 382,277 + RR42_RS22485 0.67 -0.9 382,278 - RR42_RS22485 0.67 +0.5 382,322 + RR42_RS22485 0.72 +0.5 382,323 - RR42_RS22485 0.72 +3.2 382,356 - RR42_RS22485 0.75 -2.1 382,373 + RR42_RS22485 0.77 -0.5 382,374 - RR42_RS22485 0.77 +0.1 382,512 - +0.2 382,517 + -0.1 382,517 + -1.5 382,518 - -0.2 382,695 + +1.6 382,696 - -0.3 382,696 - -0.7 382,696 - -0.8 382,696 - +0.4 382,696 - +0.6 382,697 + +1.9 382,697 + +2.3 382,698 - +0.7 382,698 - -2.2 382,698 - +0.7 382,698 - -0.0 382,698 - -0.4 382,698 - +1.3 382,728 + -1.5 382,798 - -0.9 382,869 + +0.1 382,869 + +1.1 382,869 + -0.0 382,870 - -1.3 382,870 - -0.0 382,870 - -0.4 382,872 + -0.9 382,872 + +0.1 382,872 + +0.5 382,873 - -2.1 382,873 - -1.1 382,873 - -3.3 382,873 - +0.5 383,093 + RR42_RS22490 0.24 +0.4 383,093 + RR42_RS22490 0.24 -0.2 383,093 + RR42_RS22490 0.24 -0.9 383,093 + RR42_RS22490 0.24 -0.0 383,093 + RR42_RS22490 0.24 +0.0 383,094 - RR42_RS22490 0.24 -0.9 383,189 + RR42_RS22490 0.35 -0.7 383,189 + RR42_RS22490 0.35 -0.2 383,190 - RR42_RS22490 0.35 -0.5 383,190 - RR42_RS22490 0.35 -1.1 383,310 - RR42_RS22490 0.50 +1.1 383,710 + -0.9 384,180 + RR42_RS22495 0.55 -1.3 384,180 + RR42_RS22495 0.55 -0.7 384,328 + RR42_RS22495 0.72 -1.4 384,489 + -1.5 384,609 + +0.8 384,610 - -0.6 384,681 + -1.3 384,681 + -1.1 384,682 - +0.4 384,693 + -0.4
Or see this region's nucleotide sequence