Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21370 and RR42_RS21375 are separated by 116 nucleotides RR42_RS21375 and RR42_RS21380 are separated by 40 nucleotides RR42_RS21380 and RR42_RS21385 are separated by 18 nucleotides
RR42_RS21370: RR42_RS21370 - 4-aminobutyrate aminotransferase, at 123,938 to 125,200
_RS21370
RR42_RS21375: RR42_RS21375 - succinate-semialdehyde dehydrogenase, at 125,317 to 126,783
_RS21375
RR42_RS21380: RR42_RS21380 - cupin, at 126,824 to 127,141
_RS21380
RR42_RS21385: RR42_RS21385 - acetylpolyamine aminohydrolase, at 127,160 to 128,233
_RS21385
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1 at 124.390 kb on - strand, within RR42_RS21370 at 124.398 kb on - strand, within RR42_RS21370 at 125.105 kb on + strand at 125.284 kb on - strand at 125.554 kb on + strand, within RR42_RS21375 at 125.555 kb on - strand, within RR42_RS21375 at 126.212 kb on - strand, within RR42_RS21375 at 126.229 kb on + strand, within RR42_RS21375 at 126.229 kb on + strand, within RR42_RS21375 at 126.740 kb on - strand at 126.755 kb on - strand at 126.781 kb on + strand at 126.799 kb on + strand at 126.938 kb on + strand, within RR42_RS21380 at 126.938 kb on + strand, within RR42_RS21380 at 127.451 kb on + strand, within RR42_RS21385 at 127.454 kb on + strand, within RR42_RS21385 at 127.454 kb on + strand, within RR42_RS21385 at 127.455 kb on - strand, within RR42_RS21385 at 127.455 kb on - strand, within RR42_RS21385 at 127.455 kb on - strand, within RR42_RS21385 at 127.526 kb on + strand, within RR42_RS21385 at 127.527 kb on - strand, within RR42_RS21385 at 127.527 kb on - strand, within RR42_RS21385 at 127.650 kb on - strand, within RR42_RS21385
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 124,390 - RR42_RS21370 0.36 -0.0 124,398 - RR42_RS21370 0.36 -0.3 125,105 + -0.3 125,284 - +0.3 125,554 + RR42_RS21375 0.16 +0.0 125,555 - RR42_RS21375 0.16 +0.6 126,212 - RR42_RS21375 0.61 -0.0 126,229 + RR42_RS21375 0.62 -1.4 126,229 + RR42_RS21375 0.62 +0.1 126,740 - +0.3 126,755 - +0.3 126,781 + +0.1 126,799 + +0.1 126,938 + RR42_RS21380 0.36 -2.1 126,938 + RR42_RS21380 0.36 +0.3 127,451 + RR42_RS21385 0.27 +0.8 127,454 + RR42_RS21385 0.27 -0.1 127,454 + RR42_RS21385 0.27 +0.8 127,455 - RR42_RS21385 0.27 -0.4 127,455 - RR42_RS21385 0.27 -1.0 127,455 - RR42_RS21385 0.27 +0.5 127,526 + RR42_RS21385 0.34 +0.1 127,527 - RR42_RS21385 0.34 +0.1 127,527 - RR42_RS21385 0.34 +0.6 127,650 - RR42_RS21385 0.46 -0.1
Or see this region's nucleotide sequence