Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09210 and RR42_RS09215 are separated by 4 nucleotides RR42_RS09215 and RR42_RS09220 are separated by 71 nucleotides RR42_RS09220 and RR42_RS09225 are separated by 115 nucleotides
RR42_RS09210: RR42_RS09210 - cbb3-type cytochrome C oxidase subunit III, at 1,947,587 to 1,948,195
_RS09210
RR42_RS09215: RR42_RS09215 - hypothetical protein, at 1,948,200 to 1,948,835
_RS09215
RR42_RS09220: RR42_RS09220 - hypothetical protein, at 1,948,907 to 1,949,428
_RS09220
RR42_RS09225: RR42_RS09225 - DSBA oxidoreductase, at 1,949,544 to 1,951,109
_RS09225
Position (kb) 1948
1949
1950 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1947.998 kb on + strand, within RR42_RS09210 at 1947.998 kb on + strand, within RR42_RS09210 at 1947.999 kb on - strand, within RR42_RS09210 at 1947.999 kb on - strand, within RR42_RS09210 at 1948.194 kb on - strand at 1948.450 kb on - strand, within RR42_RS09215 at 1948.550 kb on - strand, within RR42_RS09215 at 1948.555 kb on + strand, within RR42_RS09215 at 1948.599 kb on + strand, within RR42_RS09215 at 1948.599 kb on + strand, within RR42_RS09215 at 1948.600 kb on - strand, within RR42_RS09215 at 1948.806 kb on + strand at 1948.806 kb on + strand at 1949.181 kb on - strand, within RR42_RS09220 at 1949.268 kb on - strand, within RR42_RS09220 at 1949.268 kb on - strand, within RR42_RS09220 at 1949.271 kb on + strand, within RR42_RS09220 at 1949.271 kb on + strand, within RR42_RS09220 at 1949.271 kb on + strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.475 kb on - strand at 1949.490 kb on + strand at 1949.490 kb on + strand at 1949.491 kb on - strand at 1949.662 kb on - strand at 1950.194 kb on - strand, within RR42_RS09225 at 1950.244 kb on + strand, within RR42_RS09225 at 1950.351 kb on - strand, within RR42_RS09225
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,947,998 + RR42_RS09210 0.67 +1.2 1,947,998 + RR42_RS09210 0.67 -0.6 1,947,999 - RR42_RS09210 0.68 +1.0 1,947,999 - RR42_RS09210 0.68 -0.0 1,948,194 - +0.2 1,948,450 - RR42_RS09215 0.39 +1.3 1,948,550 - RR42_RS09215 0.55 +0.6 1,948,555 + RR42_RS09215 0.56 +0.3 1,948,599 + RR42_RS09215 0.63 +0.9 1,948,599 + RR42_RS09215 0.63 -0.1 1,948,600 - RR42_RS09215 0.63 +0.3 1,948,806 + -3.1 1,948,806 + +0.0 1,949,181 - RR42_RS09220 0.52 +0.6 1,949,268 - RR42_RS09220 0.69 -0.2 1,949,268 - RR42_RS09220 0.69 +0.7 1,949,271 + RR42_RS09220 0.70 +0.2 1,949,271 + RR42_RS09220 0.70 -1.7 1,949,271 + RR42_RS09220 0.70 -0.4 1,949,272 - RR42_RS09220 0.70 +0.6 1,949,272 - RR42_RS09220 0.70 +0.5 1,949,272 - RR42_RS09220 0.70 -0.8 1,949,272 - RR42_RS09220 0.70 +0.9 1,949,272 - RR42_RS09220 0.70 -0.0 1,949,272 - RR42_RS09220 0.70 +0.3 1,949,272 - RR42_RS09220 0.70 +0.4 1,949,272 - RR42_RS09220 0.70 +0.2 1,949,475 - -1.3 1,949,490 + +1.8 1,949,490 + -0.0 1,949,491 - -0.4 1,949,662 - -0.3 1,950,194 - RR42_RS09225 0.42 +1.6 1,950,244 + RR42_RS09225 0.45 +0.6 1,950,351 - RR42_RS09225 0.52 -0.3
Or see this region's nucleotide sequence