Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05605 and RR42_RS05610 are separated by 83 nucleotides RR42_RS05610 and RR42_RS05615 are separated by 59 nucleotides RR42_RS05615 and RR42_RS05620 are separated by 9 nucleotides RR42_RS05620 and RR42_RS05625 are separated by 181 nucleotides
RR42_RS05605: RR42_RS05605 - dehydratase, at 1,234,386 to 1,234,835
_RS05605
RR42_RS05610: RR42_RS05610 - dehydratase, at 1,234,919 to 1,235,398
_RS05610
RR42_RS05615: RR42_RS05615 - MFS transporter, at 1,235,458 to 1,236,759
_RS05615
RR42_RS05620: RR42_RS05620 - esterase, at 1,236,769 to 1,237,527
_RS05620
RR42_RS05625: RR42_RS05625 - 4-hydroxyacetophenone monooxygenase, at 1,237,709 to 1,239,196
_RS05625
Position (kb) 1235
1236
1237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1234.485 kb on + strand, within RR42_RS05605 at 1234.486 kb on - strand, within RR42_RS05605 at 1234.486 kb on - strand, within RR42_RS05605 at 1234.486 kb on - strand, within RR42_RS05605 at 1234.486 kb on - strand, within RR42_RS05605 at 1234.536 kb on + strand, within RR42_RS05605 at 1234.536 kb on + strand, within RR42_RS05605 at 1234.537 kb on - strand, within RR42_RS05605 at 1234.537 kb on - strand, within RR42_RS05605 at 1234.668 kb on + strand, within RR42_RS05605 at 1234.668 kb on + strand, within RR42_RS05605 at 1234.815 kb on + strand at 1234.815 kb on + strand at 1234.815 kb on + strand at 1234.816 kb on - strand at 1234.816 kb on - strand at 1234.816 kb on - strand at 1234.816 kb on - strand at 1234.816 kb on - strand at 1234.884 kb on + strand at 1234.884 kb on + strand at 1234.884 kb on + strand at 1234.885 kb on - strand at 1234.885 kb on - strand at 1234.893 kb on + strand at 1234.893 kb on + strand at 1234.894 kb on - strand at 1234.894 kb on - strand at 1234.902 kb on + strand at 1234.902 kb on + strand at 1234.925 kb on - strand at 1235.187 kb on - strand, within RR42_RS05610 at 1235.209 kb on + strand, within RR42_RS05610 at 1235.397 kb on - strand at 1235.397 kb on - strand at 1235.623 kb on + strand, within RR42_RS05615 at 1235.835 kb on - strand, within RR42_RS05615 at 1235.872 kb on + strand, within RR42_RS05615 at 1235.872 kb on + strand, within RR42_RS05615 at 1235.872 kb on + strand, within RR42_RS05615 at 1236.063 kb on - strand, within RR42_RS05615 at 1236.123 kb on - strand, within RR42_RS05615 at 1236.271 kb on + strand, within RR42_RS05615 at 1236.272 kb on - strand, within RR42_RS05615 at 1236.292 kb on + strand, within RR42_RS05615 at 1236.313 kb on + strand, within RR42_RS05615 at 1236.314 kb on - strand, within RR42_RS05615 at 1236.740 kb on + strand at 1236.740 kb on + strand at 1236.740 kb on + strand at 1236.741 kb on - strand at 1236.753 kb on + strand at 1236.902 kb on + strand, within RR42_RS05620 at 1236.902 kb on + strand, within RR42_RS05620 at 1237.323 kb on - strand, within RR42_RS05620 at 1237.711 kb on - strand at 1237.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,234,485 + RR42_RS05605 0.22 +0.8 1,234,486 - RR42_RS05605 0.22 -0.5 1,234,486 - RR42_RS05605 0.22 -0.1 1,234,486 - RR42_RS05605 0.22 -0.2 1,234,486 - RR42_RS05605 0.22 -0.2 1,234,536 + RR42_RS05605 0.33 +0.8 1,234,536 + RR42_RS05605 0.33 +0.6 1,234,537 - RR42_RS05605 0.34 -1.2 1,234,537 - RR42_RS05605 0.34 -0.3 1,234,668 + RR42_RS05605 0.63 +0.5 1,234,668 + RR42_RS05605 0.63 +0.1 1,234,815 + -0.5 1,234,815 + +0.3 1,234,815 + -1.5 1,234,816 - +0.1 1,234,816 - +0.4 1,234,816 - +0.3 1,234,816 - +1.4 1,234,816 - +0.3 1,234,884 + +0.1 1,234,884 + +1.1 1,234,884 + +0.4 1,234,885 - +0.5 1,234,885 - +0.0 1,234,893 + -0.4 1,234,893 + +0.8 1,234,894 - -3.0 1,234,894 - -1.5 1,234,902 + +0.4 1,234,902 + -0.9 1,234,925 - -1.0 1,235,187 - RR42_RS05610 0.56 -0.6 1,235,209 + RR42_RS05610 0.60 -0.9 1,235,397 - +0.4 1,235,397 - +0.4 1,235,623 + RR42_RS05615 0.13 +2.1 1,235,835 - RR42_RS05615 0.29 -2.3 1,235,872 + RR42_RS05615 0.32 -0.3 1,235,872 + RR42_RS05615 0.32 +1.7 1,235,872 + RR42_RS05615 0.32 +0.6 1,236,063 - RR42_RS05615 0.46 +0.2 1,236,123 - RR42_RS05615 0.51 +0.4 1,236,271 + RR42_RS05615 0.62 +0.3 1,236,272 - RR42_RS05615 0.63 -0.6 1,236,292 + RR42_RS05615 0.64 +1.8 1,236,313 + RR42_RS05615 0.66 -2.2 1,236,314 - RR42_RS05615 0.66 +0.3 1,236,740 + +0.2 1,236,740 + -2.1 1,236,740 + -0.1 1,236,741 - +0.7 1,236,753 + -2.0 1,236,902 + RR42_RS05620 0.18 -0.5 1,236,902 + RR42_RS05620 0.18 -0.7 1,237,323 - RR42_RS05620 0.73 +1.8 1,237,711 - -0.4 1,237,711 - +1.1
Or see this region's nucleotide sequence