Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04020 and RR42_RS04025 are separated by 75 nucleotides RR42_RS04025 and RR42_RS04030 are separated by 448 nucleotides
RR42_RS04020: RR42_RS04020 - serine/threonine protein phosphatase, at 891,910 to 892,791
_RS04020
RR42_RS04025: RR42_RS04025 - cysteine ABC transporter ATP-binding protein, at 892,867 to 893,241
_RS04025
RR42_RS04030: RR42_RS04030 - hypothetical protein, at 893,690 to 894,058
_RS04030
Position (kb) 893
894
895 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 892.852 kb on + strand at 892.853 kb on - strand at 892.853 kb on - strand at 893.007 kb on + strand, within RR42_RS04025 at 893.239 kb on + strand at 893.239 kb on + strand at 893.239 kb on + strand at 893.239 kb on + strand at 893.240 kb on - strand at 893.240 kb on - strand at 893.257 kb on + strand at 893.290 kb on - strand at 893.627 kb on - strand at 893.627 kb on - strand at 893.631 kb on + strand at 893.632 kb on - strand at 893.632 kb on - strand at 893.632 kb on - strand at 893.632 kb on - strand at 893.666 kb on - strand at 893.717 kb on + strand at 893.717 kb on + strand at 893.773 kb on - strand, within RR42_RS04030 at 893.821 kb on + strand, within RR42_RS04030 at 893.824 kb on - strand, within RR42_RS04030 at 893.824 kb on - strand, within RR42_RS04030 at 893.925 kb on + strand, within RR42_RS04030 at 893.926 kb on - strand, within RR42_RS04030 at 894.020 kb on + strand, within RR42_RS04030 at 894.021 kb on - strand, within RR42_RS04030 at 894.024 kb on + strand at 894.024 kb on + strand at 894.024 kb on + strand at 894.024 kb on + strand at 894.058 kb on + strand at 894.058 kb on + strand at 894.064 kb on + strand at 894.087 kb on - strand at 894.336 kb on - strand at 894.336 kb on - strand at 894.364 kb on - strand at 894.365 kb on + strand at 894.365 kb on + strand at 894.366 kb on - strand at 894.366 kb on - strand at 894.366 kb on - strand at 894.366 kb on - strand at 894.366 kb on - strand at 894.366 kb on - strand at 894.440 kb on + strand at 894.479 kb on - strand at 894.817 kb on + strand at 894.880 kb on - strand at 894.990 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 892,852 + +0.7 892,853 - +0.6 892,853 - -0.4 893,007 + RR42_RS04025 0.37 +1.2 893,239 + -1.9 893,239 + +0.2 893,239 + +0.4 893,239 + +0.3 893,240 - +2.5 893,240 - -1.0 893,257 + +1.1 893,290 - -0.5 893,627 - -0.3 893,627 - -0.8 893,631 + -0.1 893,632 - -0.2 893,632 - -1.0 893,632 - -0.6 893,632 - +0.9 893,666 - -0.3 893,717 + +1.7 893,717 + -0.1 893,773 - RR42_RS04030 0.22 +0.1 893,821 + RR42_RS04030 0.36 -0.7 893,824 - RR42_RS04030 0.36 +0.2 893,824 - RR42_RS04030 0.36 +0.4 893,925 + RR42_RS04030 0.64 +0.1 893,926 - RR42_RS04030 0.64 +0.5 894,020 + RR42_RS04030 0.89 +3.2 894,021 - RR42_RS04030 0.90 +0.1 894,024 + -0.9 894,024 + -0.5 894,024 + -0.6 894,024 + +0.6 894,058 + +0.2 894,058 + -1.3 894,064 + -0.1 894,087 - +0.2 894,336 - +0.1 894,336 - -0.3 894,364 - +0.5 894,365 + -0.0 894,365 + +0.1 894,366 - +0.3 894,366 - -0.1 894,366 - -0.0 894,366 - +0.1 894,366 - -1.0 894,366 - +1.7 894,440 + +0.2 894,479 - -0.8 894,817 + -1.2 894,880 - +0.1 894,990 + +0.6
Or see this region's nucleotide sequence