Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02500 and RR42_RS02505 are separated by 73 nucleotides RR42_RS02505 and RR42_RS02510 are separated by 195 nucleotides
RR42_RS02500: RR42_RS02500 - TetR family transcriptional regulator, at 561,242 to 561,832
_RS02500
RR42_RS02505: RR42_RS02505 - acyl-CoA dehydrogenase, at 561,906 to 563,693
_RS02505
RR42_RS02510: RR42_RS02510 - 3-hydroxyacyl-CoA dehydrogenase, at 563,889 to 566,315
_RS02510
Position (kb) 561
562
563
564 Strain fitness (log2 ratio) -2
-1
0
1
2 at 560.906 kb on + strand at 560.907 kb on - strand at 560.907 kb on - strand at 561.065 kb on - strand at 561.129 kb on + strand at 561.129 kb on + strand at 561.130 kb on - strand at 561.142 kb on + strand at 561.142 kb on + strand at 561.552 kb on - strand, within RR42_RS02500 at 561.552 kb on - strand, within RR42_RS02500 at 561.735 kb on + strand, within RR42_RS02500 at 561.805 kb on + strand at 561.821 kb on + strand at 561.826 kb on + strand at 561.826 kb on + strand at 561.915 kb on + strand at 561.915 kb on + strand at 561.915 kb on + strand at 562.103 kb on + strand, within RR42_RS02505 at 562.108 kb on - strand, within RR42_RS02505 at 562.108 kb on - strand, within RR42_RS02505 at 562.108 kb on - strand, within RR42_RS02505 at 562.155 kb on + strand, within RR42_RS02505 at 562.155 kb on + strand, within RR42_RS02505 at 562.165 kb on - strand, within RR42_RS02505 at 562.165 kb on - strand, within RR42_RS02505 at 562.206 kb on + strand, within RR42_RS02505 at 562.226 kb on + strand, within RR42_RS02505 at 562.248 kb on + strand, within RR42_RS02505 at 562.248 kb on + strand, within RR42_RS02505 at 562.249 kb on - strand, within RR42_RS02505 at 562.249 kb on - strand, within RR42_RS02505 at 562.249 kb on - strand, within RR42_RS02505 at 562.286 kb on - strand, within RR42_RS02505 at 562.288 kb on - strand, within RR42_RS02505 at 562.312 kb on - strand, within RR42_RS02505 at 562.356 kb on + strand, within RR42_RS02505 at 562.356 kb on + strand, within RR42_RS02505 at 562.357 kb on - strand, within RR42_RS02505 at 562.357 kb on - strand, within RR42_RS02505 at 562.357 kb on - strand, within RR42_RS02505 at 562.474 kb on - strand, within RR42_RS02505 at 563.196 kb on + strand, within RR42_RS02505 at 563.196 kb on + strand, within RR42_RS02505 at 563.197 kb on - strand, within RR42_RS02505 at 563.197 kb on - strand, within RR42_RS02505 at 563.226 kb on + strand, within RR42_RS02505 at 563.226 kb on + strand, within RR42_RS02505 at 563.227 kb on - strand, within RR42_RS02505 at 563.227 kb on - strand, within RR42_RS02505 at 563.475 kb on + strand, within RR42_RS02505 at 563.475 kb on + strand, within RR42_RS02505 at 563.476 kb on - strand, within RR42_RS02505 at 563.476 kb on - strand, within RR42_RS02505 at 563.476 kb on - strand, within RR42_RS02505 at 563.508 kb on + strand, within RR42_RS02505 at 563.528 kb on + strand at 563.568 kb on + strand at 563.569 kb on - strand at 563.569 kb on - strand at 563.598 kb on + strand at 563.598 kb on + strand at 563.712 kb on + strand at 563.724 kb on - strand at 563.740 kb on - strand at 563.740 kb on - strand at 563.772 kb on - strand at 563.803 kb on + strand at 563.804 kb on - strand at 563.878 kb on + strand at 563.878 kb on + strand at 564.117 kb on + strand at 564.202 kb on - strand, within RR42_RS02510 at 564.252 kb on - strand, within RR42_RS02510 at 564.345 kb on + strand, within RR42_RS02510 at 564.346 kb on - strand, within RR42_RS02510 at 564.528 kb on + strand, within RR42_RS02510 at 564.528 kb on + strand, within RR42_RS02510 at 564.690 kb on + strand, within RR42_RS02510 at 564.690 kb on + strand, within RR42_RS02510 at 564.690 kb on + strand, within RR42_RS02510
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 560,906 + -0.4 560,907 - +0.3 560,907 - +0.1 561,065 - -0.5 561,129 + +0.6 561,129 + +0.9 561,130 - -1.1 561,142 + -1.3 561,142 + -0.9 561,552 - RR42_RS02500 0.52 -1.3 561,552 - RR42_RS02500 0.52 +1.3 561,735 + RR42_RS02500 0.83 -2.3 561,805 + -0.5 561,821 + -1.5 561,826 + -0.4 561,826 + -0.3 561,915 + -0.6 561,915 + +0.1 561,915 + -0.1 562,103 + RR42_RS02505 0.11 -0.2 562,108 - RR42_RS02505 0.11 +0.1 562,108 - RR42_RS02505 0.11 +0.4 562,108 - RR42_RS02505 0.11 -1.4 562,155 + RR42_RS02505 0.14 -1.8 562,155 + RR42_RS02505 0.14 -2.0 562,165 - RR42_RS02505 0.14 +2.2 562,165 - RR42_RS02505 0.14 -0.2 562,206 + RR42_RS02505 0.17 -1.5 562,226 + RR42_RS02505 0.18 +0.9 562,248 + RR42_RS02505 0.19 +1.1 562,248 + RR42_RS02505 0.19 +0.4 562,249 - RR42_RS02505 0.19 -0.5 562,249 - RR42_RS02505 0.19 -0.8 562,249 - RR42_RS02505 0.19 -0.1 562,286 - RR42_RS02505 0.21 +0.0 562,288 - RR42_RS02505 0.21 -0.9 562,312 - RR42_RS02505 0.23 +0.1 562,356 + RR42_RS02505 0.25 -0.2 562,356 + RR42_RS02505 0.25 +0.2 562,357 - RR42_RS02505 0.25 +0.9 562,357 - RR42_RS02505 0.25 -0.1 562,357 - RR42_RS02505 0.25 -1.8 562,474 - RR42_RS02505 0.32 +0.3 563,196 + RR42_RS02505 0.72 -0.3 563,196 + RR42_RS02505 0.72 -0.2 563,197 - RR42_RS02505 0.72 -0.6 563,197 - RR42_RS02505 0.72 +0.1 563,226 + RR42_RS02505 0.74 +0.9 563,226 + RR42_RS02505 0.74 -0.3 563,227 - RR42_RS02505 0.74 -0.9 563,227 - RR42_RS02505 0.74 -2.3 563,475 + RR42_RS02505 0.88 +1.0 563,475 + RR42_RS02505 0.88 +1.6 563,476 - RR42_RS02505 0.88 -1.9 563,476 - RR42_RS02505 0.88 -0.3 563,476 - RR42_RS02505 0.88 -0.4 563,508 + RR42_RS02505 0.90 -0.4 563,528 + +0.9 563,568 + -0.5 563,569 - -0.8 563,569 - +0.3 563,598 + +0.1 563,598 + -1.2 563,712 + -1.3 563,724 - +0.8 563,740 - -1.3 563,740 - -0.3 563,772 - -0.5 563,803 + -0.2 563,804 - -0.8 563,878 + -0.9 563,878 + -2.3 564,117 + +0.8 564,202 - RR42_RS02510 0.13 +0.1 564,252 - RR42_RS02510 0.15 -0.9 564,345 + RR42_RS02510 0.19 +0.2 564,346 - RR42_RS02510 0.19 +0.3 564,528 + RR42_RS02510 0.26 +1.6 564,528 + RR42_RS02510 0.26 -0.4 564,690 + RR42_RS02510 0.33 -0.2 564,690 + RR42_RS02510 0.33 +0.3 564,690 + RR42_RS02510 0.33 -0.3
Or see this region's nucleotide sequence