Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02495 and RR42_RS02500 are separated by 369 nucleotides RR42_RS02500 and RR42_RS02505 are separated by 73 nucleotides
RR42_RS02495: RR42_RS02495 - cardiolipin synthase; exported protein, at 559,553 to 560,872
_RS02495
RR42_RS02500: RR42_RS02500 - TetR family transcriptional regulator, at 561,242 to 561,832
_RS02500
RR42_RS02505: RR42_RS02505 - acyl-CoA dehydrogenase, at 561,906 to 563,693
_RS02505
Position (kb) 561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 560.406 kb on - strand, within RR42_RS02495 at 560.406 kb on - strand, within RR42_RS02495 at 560.406 kb on - strand, within RR42_RS02495 at 560.513 kb on + strand, within RR42_RS02495 at 560.513 kb on + strand, within RR42_RS02495 at 560.513 kb on + strand, within RR42_RS02495 at 560.532 kb on - strand, within RR42_RS02495 at 560.690 kb on + strand, within RR42_RS02495 at 560.819 kb on + strand at 560.819 kb on + strand at 560.819 kb on + strand at 560.820 kb on - strand at 560.820 kb on - strand at 560.820 kb on - strand at 560.821 kb on + strand at 560.821 kb on + strand at 560.821 kb on + strand at 560.821 kb on + strand at 560.821 kb on + strand at 560.821 kb on + strand at 560.822 kb on - strand at 560.822 kb on - strand at 560.906 kb on + strand at 560.907 kb on - strand at 560.907 kb on - strand at 561.065 kb on - strand at 561.129 kb on + strand at 561.129 kb on + strand at 561.130 kb on - strand at 561.142 kb on + strand at 561.142 kb on + strand at 561.552 kb on - strand, within RR42_RS02500 at 561.552 kb on - strand, within RR42_RS02500 at 561.735 kb on + strand, within RR42_RS02500 at 561.805 kb on + strand at 561.821 kb on + strand at 561.826 kb on + strand at 561.826 kb on + strand at 561.915 kb on + strand at 561.915 kb on + strand at 561.915 kb on + strand at 562.103 kb on + strand, within RR42_RS02505 at 562.108 kb on - strand, within RR42_RS02505 at 562.108 kb on - strand, within RR42_RS02505 at 562.108 kb on - strand, within RR42_RS02505 at 562.155 kb on + strand, within RR42_RS02505 at 562.155 kb on + strand, within RR42_RS02505 at 562.165 kb on - strand, within RR42_RS02505 at 562.165 kb on - strand, within RR42_RS02505 at 562.206 kb on + strand, within RR42_RS02505 at 562.226 kb on + strand, within RR42_RS02505 at 562.248 kb on + strand, within RR42_RS02505 at 562.248 kb on + strand, within RR42_RS02505 at 562.249 kb on - strand, within RR42_RS02505 at 562.249 kb on - strand, within RR42_RS02505 at 562.249 kb on - strand, within RR42_RS02505 at 562.286 kb on - strand, within RR42_RS02505 at 562.288 kb on - strand, within RR42_RS02505 at 562.312 kb on - strand, within RR42_RS02505 at 562.356 kb on + strand, within RR42_RS02505 at 562.356 kb on + strand, within RR42_RS02505 at 562.357 kb on - strand, within RR42_RS02505 at 562.357 kb on - strand, within RR42_RS02505 at 562.357 kb on - strand, within RR42_RS02505 at 562.474 kb on - strand, within RR42_RS02505
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 560,406 - RR42_RS02495 0.65 -2.3 560,406 - RR42_RS02495 0.65 -2.8 560,406 - RR42_RS02495 0.65 +0.2 560,513 + RR42_RS02495 0.73 -2.5 560,513 + RR42_RS02495 0.73 -0.6 560,513 + RR42_RS02495 0.73 -0.5 560,532 - RR42_RS02495 0.74 -2.6 560,690 + RR42_RS02495 0.86 -2.8 560,819 + -2.9 560,819 + -1.8 560,819 + -1.2 560,820 - -1.3 560,820 - -2.1 560,820 - +0.3 560,821 + -1.7 560,821 + -1.3 560,821 + -0.3 560,821 + -1.5 560,821 + -2.2 560,821 + +1.5 560,822 - -1.3 560,822 - -2.1 560,906 + -0.4 560,907 - +0.3 560,907 - +0.1 561,065 - -0.5 561,129 + +0.6 561,129 + +0.9 561,130 - -1.1 561,142 + -1.3 561,142 + -0.9 561,552 - RR42_RS02500 0.52 -1.3 561,552 - RR42_RS02500 0.52 +1.3 561,735 + RR42_RS02500 0.83 -2.3 561,805 + -0.5 561,821 + -1.5 561,826 + -0.4 561,826 + -0.3 561,915 + -0.6 561,915 + +0.1 561,915 + -0.1 562,103 + RR42_RS02505 0.11 -0.2 562,108 - RR42_RS02505 0.11 +0.1 562,108 - RR42_RS02505 0.11 +0.4 562,108 - RR42_RS02505 0.11 -1.4 562,155 + RR42_RS02505 0.14 -1.8 562,155 + RR42_RS02505 0.14 -2.0 562,165 - RR42_RS02505 0.14 +2.2 562,165 - RR42_RS02505 0.14 -0.2 562,206 + RR42_RS02505 0.17 -1.5 562,226 + RR42_RS02505 0.18 +0.9 562,248 + RR42_RS02505 0.19 +1.1 562,248 + RR42_RS02505 0.19 +0.4 562,249 - RR42_RS02505 0.19 -0.5 562,249 - RR42_RS02505 0.19 -0.8 562,249 - RR42_RS02505 0.19 -0.1 562,286 - RR42_RS02505 0.21 +0.0 562,288 - RR42_RS02505 0.21 -0.9 562,312 - RR42_RS02505 0.23 +0.1 562,356 + RR42_RS02505 0.25 -0.2 562,356 + RR42_RS02505 0.25 +0.2 562,357 - RR42_RS02505 0.25 +0.9 562,357 - RR42_RS02505 0.25 -0.1 562,357 - RR42_RS02505 0.25 -1.8 562,474 - RR42_RS02505 0.32 +0.3
Or see this region's nucleotide sequence