Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02105

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02095 and RR42_RS02100 are separated by 54 nucleotidesRR42_RS02100 and RR42_RS02105 are separated by 15 nucleotidesRR42_RS02105 and RR42_RS02110 are separated by 151 nucleotides RR42_RS02095: RR42_RS02095 - organic solvent tolerance protein OstA, at 465,641 to 466,285 _RS02095 RR42_RS02100: RR42_RS02100 - hypothetical protein, at 466,340 to 466,966 _RS02100 RR42_RS02105: RR42_RS02105 - arabinose 5-phosphate isomerase, at 466,982 to 467,965 _RS02105 RR42_RS02110: RR42_RS02110 - potassium transporter, at 468,117 to 470,096 _RS02110 Position (kb) 466 467 468Strain fitness (log2 ratio) -1 0 1at 466.389 kb on - strandat 467.977 kb on - strandat 467.977 kb on - strandat 467.977 kb on - strandat 468.138 kb on - strandat 468.138 kb on - strandat 468.213 kb on + strandat 468.282 kb on + strandat 468.282 kb on + strandat 468.282 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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466,389 - -0.5
467,977 - +0.2
467,977 - +0.9
467,977 - -0.8
468,138 - -0.4
468,138 - +0.1
468,213 + +0.6
468,282 + +0.2
468,282 + -0.1
468,282 + +0.7

Or see this region's nucleotide sequence