Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02050 and RR42_RS02055 are separated by 6 nucleotides RR42_RS02055 and RR42_RS02060 are separated by 66 nucleotides RR42_RS02060 and RR42_RS02065 are separated by 119 nucleotides RR42_RS02065 and RR42_RS02070 are separated by 191 nucleotides
RR42_RS02050: RR42_RS02050 - adenine glycosylase, at 457,498 to 458,667
_RS02050
RR42_RS02055: RR42_RS02055 - ATP-dependent protease, at 458,674 to 459,351
_RS02055
RR42_RS02060: RR42_RS02060 - nucleotide-binding protein, at 459,418 to 460,335
_RS02060
RR42_RS02065: RR42_RS02065 - phosphate starvation-inducible protein PsiF, at 460,455 to 460,778
_RS02065
RR42_RS02070: RR42_RS02070 - HPr kinase, at 460,970 to 461,941
_RS02070
Position (kb) 459
460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 458.463 kb on + strand, within RR42_RS02050 at 458.464 kb on - strand, within RR42_RS02050 at 458.464 kb on - strand, within RR42_RS02050 at 458.464 kb on - strand, within RR42_RS02050 at 458.606 kb on + strand at 458.699 kb on + strand at 458.699 kb on + strand at 458.699 kb on + strand at 458.699 kb on + strand at 458.699 kb on + strand at 458.699 kb on + strand at 458.699 kb on + strand at 458.699 kb on + strand at 458.699 kb on + strand at 458.700 kb on - strand at 458.700 kb on - strand at 458.700 kb on - strand at 458.700 kb on - strand at 458.700 kb on - strand at 458.700 kb on - strand at 458.700 kb on - strand at 458.703 kb on + strand at 458.704 kb on - strand at 458.704 kb on - strand at 458.704 kb on - strand at 458.704 kb on - strand at 458.881 kb on - strand, within RR42_RS02055 at 459.054 kb on + strand, within RR42_RS02055 at 459.054 kb on + strand, within RR42_RS02055 at 459.054 kb on + strand, within RR42_RS02055 at 459.054 kb on + strand, within RR42_RS02055 at 459.055 kb on - strand, within RR42_RS02055 at 459.055 kb on - strand, within RR42_RS02055 at 459.197 kb on + strand, within RR42_RS02055 at 459.197 kb on + strand, within RR42_RS02055 at 459.198 kb on - strand, within RR42_RS02055 at 459.198 kb on - strand, within RR42_RS02055 at 459.244 kb on + strand, within RR42_RS02055 at 459.245 kb on - strand, within RR42_RS02055 at 459.245 kb on - strand, within RR42_RS02055 at 459.245 kb on - strand, within RR42_RS02055 at 459.249 kb on + strand, within RR42_RS02055 at 459.283 kb on - strand, within RR42_RS02055 at 459.459 kb on + strand at 459.459 kb on + strand at 459.460 kb on - strand at 459.460 kb on - strand at 459.460 kb on - strand at 459.460 kb on - strand at 459.460 kb on - strand at 459.476 kb on + strand at 459.476 kb on + strand at 459.476 kb on + strand at 459.476 kb on + strand at 459.477 kb on - strand at 459.500 kb on + strand at 459.500 kb on + strand at 459.500 kb on + strand at 459.501 kb on - strand at 459.501 kb on - strand at 459.549 kb on - strand, within RR42_RS02060 at 459.549 kb on - strand, within RR42_RS02060 at 459.594 kb on - strand, within RR42_RS02060 at 459.594 kb on - strand, within RR42_RS02060 at 459.601 kb on + strand, within RR42_RS02060 at 459.602 kb on - strand, within RR42_RS02060 at 459.602 kb on - strand, within RR42_RS02060 at 459.602 kb on - strand, within RR42_RS02060 at 459.602 kb on - strand, within RR42_RS02060 at 459.602 kb on - strand, within RR42_RS02060 at 459.695 kb on + strand, within RR42_RS02060 at 459.695 kb on + strand, within RR42_RS02060 at 459.695 kb on + strand, within RR42_RS02060 at 459.696 kb on - strand at 459.696 kb on - strand, within RR42_RS02060 at 459.696 kb on - strand, within RR42_RS02060 at 459.696 kb on - strand, within RR42_RS02060 at 459.699 kb on - strand, within RR42_RS02060 at 459.701 kb on - strand, within RR42_RS02060 at 459.837 kb on + strand, within RR42_RS02060 at 459.837 kb on + strand, within RR42_RS02060 at 459.837 kb on + strand, within RR42_RS02060 at 459.837 kb on + strand, within RR42_RS02060 at 459.838 kb on - strand, within RR42_RS02060 at 459.911 kb on + strand, within RR42_RS02060 at 460.050 kb on - strand, within RR42_RS02060 at 460.050 kb on - strand, within RR42_RS02060 at 460.071 kb on + strand, within RR42_RS02060 at 460.072 kb on - strand, within RR42_RS02060 at 460.209 kb on - strand, within RR42_RS02060 at 460.209 kb on - strand, within RR42_RS02060 at 460.209 kb on - strand, within RR42_RS02060 at 460.260 kb on - strand at 460.276 kb on + strand at 460.276 kb on + strand at 460.277 kb on - strand at 460.277 kb on - strand at 460.277 kb on - strand at 460.277 kb on - strand at 460.320 kb on + strand at 460.320 kb on + strand at 460.320 kb on + strand at 460.321 kb on - strand at 460.321 kb on - strand at 460.321 kb on - strand at 460.321 kb on - strand at 460.324 kb on + strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.335 kb on + strand at 460.335 kb on + strand at 460.349 kb on + strand at 460.349 kb on + strand at 460.350 kb on - strand at 460.391 kb on - strand at 460.423 kb on + strand at 460.451 kb on + strand at 460.456 kb on + strand at 460.456 kb on + strand at 460.456 kb on + strand at 460.456 kb on + strand at 460.456 kb on + strand at 460.457 kb on - strand at 460.457 kb on - strand at 460.577 kb on + strand, within RR42_RS02065 at 460.578 kb on - strand, within RR42_RS02065 at 460.858 kb on + strand at 460.859 kb on - strand at 460.915 kb on + strand at 460.915 kb on + strand at 460.915 kb on + strand at 460.916 kb on - strand at 460.916 kb on - strand at 460.916 kb on - strand at 460.916 kb on - strand at 460.972 kb on - strand at 460.972 kb on - strand at 460.972 kb on - strand at 460.972 kb on - strand at 460.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 458,463 + RR42_RS02050 0.82 +0.3 458,464 - RR42_RS02050 0.83 -1.9 458,464 - RR42_RS02050 0.83 +0.4 458,464 - RR42_RS02050 0.83 -0.9 458,606 + +0.5 458,699 + +0.1 458,699 + +1.0 458,699 + -0.5 458,699 + -0.1 458,699 + +0.1 458,699 + +0.5 458,699 + -1.5 458,699 + -2.0 458,699 + +0.0 458,700 - +0.6 458,700 - +1.1 458,700 - -0.3 458,700 - +0.1 458,700 - -0.7 458,700 - -0.3 458,700 - -0.3 458,703 + +0.9 458,704 - +0.1 458,704 - -0.0 458,704 - -1.3 458,704 - +0.7 458,881 - RR42_RS02055 0.31 -2.5 459,054 + RR42_RS02055 0.56 -0.4 459,054 + RR42_RS02055 0.56 +0.5 459,054 + RR42_RS02055 0.56 +0.6 459,054 + RR42_RS02055 0.56 -0.7 459,055 - RR42_RS02055 0.56 +1.1 459,055 - RR42_RS02055 0.56 +0.0 459,197 + RR42_RS02055 0.77 +1.4 459,197 + RR42_RS02055 0.77 -0.5 459,198 - RR42_RS02055 0.77 +0.1 459,198 - RR42_RS02055 0.77 -1.4 459,244 + RR42_RS02055 0.84 -1.9 459,245 - RR42_RS02055 0.84 +0.2 459,245 - RR42_RS02055 0.84 -1.0 459,245 - RR42_RS02055 0.84 +0.5 459,249 + RR42_RS02055 0.85 +0.9 459,283 - RR42_RS02055 0.90 +0.1 459,459 + -1.3 459,459 + -3.7 459,460 - -0.8 459,460 - +0.4 459,460 - -2.5 459,460 - -1.8 459,460 - +1.3 459,476 + -0.4 459,476 + -1.1 459,476 + -1.3 459,476 + -2.0 459,477 - +1.1 459,500 + -1.5 459,500 + -1.1 459,500 + -2.6 459,501 - -0.4 459,501 - +3.1 459,549 - RR42_RS02060 0.14 -2.2 459,549 - RR42_RS02060 0.14 -1.8 459,594 - RR42_RS02060 0.19 -1.3 459,594 - RR42_RS02060 0.19 +2.1 459,601 + RR42_RS02060 0.20 -2.0 459,602 - RR42_RS02060 0.20 -2.7 459,602 - RR42_RS02060 0.20 -1.3 459,602 - RR42_RS02060 0.20 -1.5 459,602 - RR42_RS02060 0.20 -0.2 459,602 - RR42_RS02060 0.20 +1.5 459,695 + RR42_RS02060 0.30 -1.5 459,695 + RR42_RS02060 0.30 -0.8 459,695 + RR42_RS02060 0.30 -0.9 459,696 - -0.5 459,696 - RR42_RS02060 0.30 -0.3 459,696 - RR42_RS02060 0.30 -2.3 459,696 - RR42_RS02060 0.30 +0.1 459,699 - RR42_RS02060 0.31 -1.7 459,701 - RR42_RS02060 0.31 -2.3 459,837 + RR42_RS02060 0.46 -2.7 459,837 + RR42_RS02060 0.46 -0.1 459,837 + RR42_RS02060 0.46 -0.6 459,837 + RR42_RS02060 0.46 -1.9 459,838 - RR42_RS02060 0.46 -0.8 459,911 + RR42_RS02060 0.54 -0.7 460,050 - RR42_RS02060 0.69 -0.8 460,050 - RR42_RS02060 0.69 +1.1 460,071 + RR42_RS02060 0.71 -1.5 460,072 - RR42_RS02060 0.71 -3.1 460,209 - RR42_RS02060 0.86 -1.8 460,209 - RR42_RS02060 0.86 -1.3 460,209 - RR42_RS02060 0.86 -2.1 460,260 - -1.9 460,276 + -1.3 460,276 + -1.2 460,277 - -3.3 460,277 - -2.4 460,277 - -1.0 460,277 - -2.0 460,320 + -0.3 460,320 + -2.9 460,320 + -1.7 460,321 - -1.5 460,321 - -0.5 460,321 - -0.5 460,321 - -1.5 460,324 + -1.9 460,325 - -1.7 460,325 - -0.7 460,325 - -0.5 460,325 - -1.7 460,325 - -1.5 460,325 - -0.9 460,325 - -1.3 460,325 - -0.9 460,335 + -1.6 460,335 + +0.5 460,349 + -0.5 460,349 + -2.9 460,350 - -0.1 460,391 - +0.2 460,423 + -0.0 460,451 + -0.9 460,456 + -0.7 460,456 + -0.2 460,456 + +0.4 460,456 + +0.2 460,456 + +0.5 460,457 - -0.3 460,457 - -0.0 460,577 + RR42_RS02065 0.38 -0.1 460,578 - RR42_RS02065 0.38 -0.4 460,858 + +0.2 460,859 - -0.7 460,915 + -0.5 460,915 + -1.1 460,915 + -1.3 460,916 - -1.3 460,916 - -1.3 460,916 - +0.6 460,916 - -1.4 460,972 - -0.4 460,972 - -0.2 460,972 - +0.2 460,972 - +0.3 460,972 - -1.0
Or see this region's nucleotide sequence