Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS24255

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS24250 and RALBFv3_RS17190 are separated by 507 nucleotidesRALBFv3_RS17190 and RALBFv3_RS24255 are separated by 148 nucleotidesRALBFv3_RS24255 and RALBFv3_RS17195 are separated by 111 nucleotides RALBFv3_RS24250: RALBFv3_RS24250 - protein phosphatase, at 342,383 to 343,033 _RS24250 RALBFv3_RS17190: RALBFv3_RS17190 - hypothetical protein, at 343,541 to 343,870 _RS17190 RALBFv3_RS24255: RALBFv3_RS24255 - hypothetical protein, at 344,019 to 344,411 _RS24255 RALBFv3_RS17195: RALBFv3_RS17195 - hypothetical protein, at 344,523 to 345,458 _RS17195 Position (kb) 344 345Strain fitness (log2 ratio) -2 -1 0 1 2at 343.091 kb on + strandat 343.091 kb on + strandat 343.206 kb on + strandat 343.207 kb on - strandat 343.238 kb on + strandat 343.239 kb on - strandat 343.273 kb on + strandat 343.275 kb on + strandat 343.275 kb on + strandat 343.275 kb on + strandat 343.275 kb on + strandat 343.275 kb on + strandat 343.275 kb on + strandat 343.275 kb on + strandat 343.275 kb on + strandat 343.275 kb on + strandat 343.276 kb on - strandat 343.276 kb on - strandat 343.276 kb on - strandat 343.276 kb on - strandat 343.276 kb on - strandat 343.276 kb on - strandat 343.323 kb on + strandat 343.323 kb on + strandat 343.323 kb on + strandat 343.323 kb on + strandat 343.324 kb on - strandat 343.462 kb on + strandat 343.463 kb on - strandat 343.543 kb on - strandat 343.543 kb on - strandat 343.669 kb on - strand, within RALBFv3_RS17190at 343.669 kb on - strand, within RALBFv3_RS17190at 343.669 kb on - strand, within RALBFv3_RS17190at 343.669 kb on - strand, within RALBFv3_RS17190at 343.669 kb on - strand, within RALBFv3_RS17190at 343.704 kb on + strand, within RALBFv3_RS17190at 343.704 kb on + strand, within RALBFv3_RS17190at 343.746 kb on + strand, within RALBFv3_RS17190at 343.746 kb on + strand, within RALBFv3_RS17190at 343.856 kb on - strandat 343.867 kb on + strandat 343.965 kb on - strandat 343.995 kb on + strandat 344.049 kb on - strandat 344.071 kb on - strand, within RALBFv3_RS24255at 344.325 kb on + strand, within RALBFv3_RS24255at 344.326 kb on - strand, within RALBFv3_RS24255at 344.326 kb on - strand, within RALBFv3_RS24255at 344.353 kb on - strand, within RALBFv3_RS24255at 344.509 kb on - strandat 344.509 kb on - strandat 344.525 kb on - strandat 344.525 kb on - strandat 344.525 kb on - strandat 344.525 kb on - strandat 344.525 kb on - strandat 344.525 kb on - strandat 344.525 kb on - strandat 344.593 kb on + strandat 344.593 kb on + strandat 344.593 kb on + strandat 344.594 kb on - strandat 344.594 kb on - strandat 344.594 kb on - strandat 344.594 kb on - strandat 344.594 kb on - strandat 344.641 kb on + strand, within RALBFv3_RS17195at 344.641 kb on + strand, within RALBFv3_RS17195at 344.642 kb on - strand, within RALBFv3_RS17195at 344.728 kb on + strand, within RALBFv3_RS17195at 344.729 kb on - strand, within RALBFv3_RS17195at 344.729 kb on - strand, within RALBFv3_RS17195at 344.729 kb on - strand, within RALBFv3_RS17195at 344.729 kb on - strand, within RALBFv3_RS17195at 344.732 kb on - strand, within RALBFv3_RS17195at 344.792 kb on - strand, within RALBFv3_RS17195at 344.810 kb on - strand, within RALBFv3_RS17195at 344.884 kb on + strand, within RALBFv3_RS17195at 344.884 kb on + strand, within RALBFv3_RS17195at 344.884 kb on + strand, within RALBFv3_RS17195at 344.884 kb on + strand, within RALBFv3_RS17195at 344.884 kb on + strand, within RALBFv3_RS17195at 344.885 kb on - strand, within RALBFv3_RS17195at 344.885 kb on - strand, within RALBFv3_RS17195at 344.885 kb on - strand, within RALBFv3_RS17195at 344.885 kb on - strand, within RALBFv3_RS17195at 344.885 kb on - strand, within RALBFv3_RS17195at 344.885 kb on - strand, within RALBFv3_RS17195at 344.885 kb on - strand, within RALBFv3_RS17195at 345.151 kb on + strand, within RALBFv3_RS17195at 345.152 kb on - strand, within RALBFv3_RS17195at 345.152 kb on - strand, within RALBFv3_RS17195at 345.201 kb on + strand, within RALBFv3_RS17195at 345.202 kb on + strand, within RALBFv3_RS17195at 345.203 kb on - strand, within RALBFv3_RS17195at 345.203 kb on - strand, within RALBFv3_RS17195

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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343,091 + +0.1
343,091 + +0.7
343,206 + -0.5
343,207 - -1.7
343,238 + -0.7
343,239 - -0.7
343,273 + -1.5
343,275 + +0.1
343,275 + -0.3
343,275 + +0.5
343,275 + -0.2
343,275 + +0.1
343,275 + -0.1
343,275 + +0.5
343,275 + -0.1
343,275 + +0.0
343,276 - -0.9
343,276 - +0.1
343,276 - +2.5
343,276 - -0.1
343,276 - -0.3
343,276 - -1.0
343,323 + -0.5
343,323 + -1.5
343,323 + +0.8
343,323 + -0.5
343,324 - +0.9
343,462 + -0.5
343,463 - -0.2
343,543 - -1.2
343,543 - -0.3
343,669 - RALBFv3_RS17190 0.39 -0.3
343,669 - RALBFv3_RS17190 0.39 +0.3
343,669 - RALBFv3_RS17190 0.39 +0.0
343,669 - RALBFv3_RS17190 0.39 +1.2
343,669 - RALBFv3_RS17190 0.39 +0.5
343,704 + RALBFv3_RS17190 0.49 -0.1
343,704 + RALBFv3_RS17190 0.49 +1.1
343,746 + RALBFv3_RS17190 0.62 +0.5
343,746 + RALBFv3_RS17190 0.62 +0.3
343,856 - -0.4
343,867 + -0.5
343,965 - +0.8
343,995 + -0.6
344,049 - -0.8
344,071 - RALBFv3_RS24255 0.13 +0.4
344,325 + RALBFv3_RS24255 0.78 +0.7
344,326 - RALBFv3_RS24255 0.78 -0.7
344,326 - RALBFv3_RS24255 0.78 -0.7
344,353 - RALBFv3_RS24255 0.85 +0.9
344,509 - -1.0
344,509 - -0.4
344,525 - -1.2
344,525 - -0.5
344,525 - +0.2
344,525 - +0.9
344,525 - +0.1
344,525 - -0.8
344,525 - -0.3
344,593 + -0.3
344,593 + +0.8
344,593 + -0.5
344,594 - +0.2
344,594 - +0.8
344,594 - -0.9
344,594 - +0.7
344,594 - -1.2
344,641 + RALBFv3_RS17195 0.13 +1.1
344,641 + RALBFv3_RS17195 0.13 +1.8
344,642 - RALBFv3_RS17195 0.13 -2.2
344,728 + RALBFv3_RS17195 0.22 +0.1
344,729 - RALBFv3_RS17195 0.22 -0.4
344,729 - RALBFv3_RS17195 0.22 -1.9
344,729 - RALBFv3_RS17195 0.22 -0.3
344,729 - RALBFv3_RS17195 0.22 -0.4
344,732 - RALBFv3_RS17195 0.22 -1.0
344,792 - RALBFv3_RS17195 0.29 +0.3
344,810 - RALBFv3_RS17195 0.31 -1.5
344,884 + RALBFv3_RS17195 0.39 +0.5
344,884 + RALBFv3_RS17195 0.39 +0.1
344,884 + RALBFv3_RS17195 0.39 +0.6
344,884 + RALBFv3_RS17195 0.39 +0.1
344,884 + RALBFv3_RS17195 0.39 +0.1
344,885 - RALBFv3_RS17195 0.39 -0.6
344,885 - RALBFv3_RS17195 0.39 -0.6
344,885 - RALBFv3_RS17195 0.39 -0.8
344,885 - RALBFv3_RS17195 0.39 -0.4
344,885 - RALBFv3_RS17195 0.39 +1.8
344,885 - RALBFv3_RS17195 0.39 +0.3
344,885 - RALBFv3_RS17195 0.39 -1.2
345,151 + RALBFv3_RS17195 0.67 -0.2
345,152 - RALBFv3_RS17195 0.67 +0.3
345,152 - RALBFv3_RS17195 0.67 +0.1
345,201 + RALBFv3_RS17195 0.72 +0.2
345,202 + RALBFv3_RS17195 0.73 -0.1
345,203 - RALBFv3_RS17195 0.73 +2.7
345,203 - RALBFv3_RS17195 0.73 -0.9

Or see this region's nucleotide sequence