Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS06545 and RALBFv3_RS06550 are separated by 316 nucleotides RALBFv3_RS06550 and RALBFv3_RS06555 are separated by 10 nucleotides RALBFv3_RS06555 and RALBFv3_RS06560 are separated by 26 nucleotides RALBFv3_RS06560 and RALBFv3_RS06565 are separated by 35 nucleotides
RALBFv3_RS06545: RALBFv3_RS06545 - ubiquinone biosynthesis protein, at 1,458,491 to 1,459,777
_RS06545
RALBFv3_RS06550: RALBFv3_RS06550 - hypothetical protein, at 1,460,094 to 1,460,480
_RS06550
RALBFv3_RS06555: RALBFv3_RS06555 - hypothetical protein, at 1,460,491 to 1,460,814
_RS06555
RALBFv3_RS06560: RALBFv3_RS06560 - lytic transglycosylase, at 1,460,841 to 1,461,353
_RS06560
RALBFv3_RS06565: RALBFv3_RS06565 - flagellar protein FliT, at 1,461,389 to 1,461,772
_RS06565
Position (kb) 1460
1461 Strain fitness (log2 ratio) -2
-1
0
1 at 1459.772 kb on - strand at 1459.791 kb on + strand at 1459.791 kb on + strand at 1460.012 kb on + strand at 1460.013 kb on - strand at 1460.056 kb on + strand at 1460.057 kb on - strand at 1460.454 kb on + strand at 1460.455 kb on - strand at 1460.478 kb on + strand at 1460.606 kb on - strand, within RALBFv3_RS06555 at 1460.606 kb on - strand, within RALBFv3_RS06555 at 1460.768 kb on - strand, within RALBFv3_RS06555 at 1460.768 kb on - strand, within RALBFv3_RS06555 at 1461.000 kb on + strand, within RALBFv3_RS06560 at 1461.000 kb on + strand, within RALBFv3_RS06560 at 1461.001 kb on - strand, within RALBFv3_RS06560 at 1461.001 kb on - strand, within RALBFv3_RS06560 at 1461.001 kb on - strand, within RALBFv3_RS06560 at 1461.192 kb on + strand, within RALBFv3_RS06560 at 1461.262 kb on - strand, within RALBFv3_RS06560 at 1461.393 kb on + strand at 1461.394 kb on - strand at 1461.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,459,772 - -0.1 1,459,791 + -1.3 1,459,791 + -0.6 1,460,012 + +1.7 1,460,013 - -0.5 1,460,056 + +0.3 1,460,057 - +1.2 1,460,454 + +0.8 1,460,455 - +0.1 1,460,478 + -0.4 1,460,606 - RALBFv3_RS06555 0.35 +1.6 1,460,606 - RALBFv3_RS06555 0.35 +0.1 1,460,768 - RALBFv3_RS06555 0.85 -0.9 1,460,768 - RALBFv3_RS06555 0.85 +0.6 1,461,000 + RALBFv3_RS06560 0.31 +0.2 1,461,000 + RALBFv3_RS06560 0.31 -0.6 1,461,001 - RALBFv3_RS06560 0.31 +0.5 1,461,001 - RALBFv3_RS06560 0.31 -1.9 1,461,001 - RALBFv3_RS06560 0.31 +1.2 1,461,192 + RALBFv3_RS06560 0.68 -0.5 1,461,262 - RALBFv3_RS06560 0.82 +0.3 1,461,393 + +0.1 1,461,394 - -1.8 1,461,394 - -0.4
Or see this region's nucleotide sequence