Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03420 and RALBFv3_RS03425 are separated by 60 nucleotides RALBFv3_RS03425 and RALBFv3_RS03430 are separated by 18 nucleotides RALBFv3_RS03430 and RALBFv3_RS03435 overlap by 4 nucleotides RALBFv3_RS03435 and RALBFv3_RS03440 are separated by 262 nucleotides
RALBFv3_RS03420: RALBFv3_RS03420 - DUF969 domain-containing protein, at 754,149 to 754,871
_RS03420
RALBFv3_RS03425: RALBFv3_RS03425 - LamB/YcsF family protein, at 754,932 to 755,675
_RS03425
RALBFv3_RS03430: RALBFv3_RS03430 - allophanate hydrolase, at 755,694 to 756,755
_RS03430
RALBFv3_RS03435: RALBFv3_RS03435 - allophanate hydrolase, at 756,752 to 757,399
_RS03435
RALBFv3_RS03440: RALBFv3_RS03440 - Bcr/CflA family drug resistance efflux transporter, at 757,662 to 758,885
_RS03440
Position (kb) 755
756
757 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 754.850 kb on + strand at 754.851 kb on + strand at 754.852 kb on - strand at 754.865 kb on + strand at 754.866 kb on - strand at 754.866 kb on - strand at 754.888 kb on - strand at 754.888 kb on - strand at 756.139 kb on + strand, within RALBFv3_RS03430 at 756.388 kb on + strand, within RALBFv3_RS03430 at 756.542 kb on + strand, within RALBFv3_RS03430 at 756.543 kb on - strand, within RALBFv3_RS03430 at 756.610 kb on + strand, within RALBFv3_RS03430 at 756.611 kb on - strand, within RALBFv3_RS03430 at 756.755 kb on + strand at 756.755 kb on + strand at 756.889 kb on - strand, within RALBFv3_RS03435 at 756.889 kb on - strand, within RALBFv3_RS03435 at 756.993 kb on + strand, within RALBFv3_RS03435 at 756.994 kb on - strand, within RALBFv3_RS03435 at 757.032 kb on + strand, within RALBFv3_RS03435 at 757.476 kb on + strand at 757.505 kb on + strand at 757.512 kb on + strand at 757.513 kb on - strand at 757.568 kb on + strand at 757.568 kb on + strand at 757.568 kb on + strand at 757.569 kb on - strand at 757.571 kb on + strand at 757.572 kb on - strand at 757.572 kb on - strand at 757.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 754,850 + -1.2 754,851 + +0.5 754,852 - -0.3 754,865 + +0.1 754,866 - -0.3 754,866 - -1.6 754,888 - +1.4 754,888 - +0.3 756,139 + RALBFv3_RS03430 0.42 +0.4 756,388 + RALBFv3_RS03430 0.65 -0.2 756,542 + RALBFv3_RS03430 0.80 +4.2 756,543 - RALBFv3_RS03430 0.80 +2.8 756,610 + RALBFv3_RS03430 0.86 +0.5 756,611 - RALBFv3_RS03430 0.86 -0.0 756,755 + +0.9 756,755 + +0.4 756,889 - RALBFv3_RS03435 0.21 +0.8 756,889 - RALBFv3_RS03435 0.21 +0.4 756,993 + RALBFv3_RS03435 0.37 -0.9 756,994 - RALBFv3_RS03435 0.37 +0.7 757,032 + RALBFv3_RS03435 0.43 -0.3 757,476 + +0.7 757,505 + -0.4 757,512 + -0.4 757,513 - -0.8 757,568 + -0.9 757,568 + -0.0 757,568 + -0.5 757,569 - +1.4 757,571 + +0.1 757,572 - +1.7 757,572 - -0.5 757,617 + +0.3
Or see this region's nucleotide sequence